Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OM418_RS07475 Genome accession   NZ_CP110533
Coordinates   1616030..1616656 (+) Length   208 a.a.
NCBI ID   WP_023618860.1    Uniprot ID   A0A155YQ93
Organism   Enterobacter quasiroggenkampii strain WS12-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1611030..1621656
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM418_RS07455 (OM418_07455) - 1611427..1613187 (-) 1761 WP_069719498.1 AAA family ATPase -
  OM418_RS07460 (OM418_07460) matP 1613374..1613826 (+) 453 WP_008499929.1 macrodomain Ter protein MatP -
  OM418_RS07465 (OM418_07465) ompA 1613893..1614948 (-) 1056 WP_008499928.1 porin OmpA -
  OM418_RS07470 (OM418_07470) sulA 1615303..1615812 (-) 510 WP_032637628.1 SOS-induced cell division inhibitor SulA -
  OM418_RS07475 (OM418_07475) sxy/tfoX 1616030..1616656 (+) 627 WP_023618860.1 TfoX/Sxy family DNA transformation protein Regulator
  OM418_RS07480 (OM418_07480) yccS 1616613..1618775 (-) 2163 WP_111966972.1 YccS family putative transporter -
  OM418_RS07485 (OM418_07485) - 1618795..1619241 (-) 447 WP_023343701.1 YccF domain-containing protein -
  OM418_RS07490 (OM418_07490) helD 1619365..1621419 (+) 2055 WP_277718560.1 DNA helicase IV -

Sequence

Protein


Download         Length: 208 a.a.        Molecular weight: 23898.49 Da        Isoelectric Point: 9.6439

>NTDB_id=755217 OM418_RS07475 WP_023618860.1 1616030..1616656(+) (sxy/tfoX) [Enterobacter quasiroggenkampii strain WS12-3]
MKKISYERIYKSQEYLSPLGEIHHRALFGGYTLAVDDAVFAMVSDGELYLRACEESAKYCVKNASSFLTLMKRGRPVLLN
YYRVDDGLWQDRERLLQLSSFALSAARKERYQRHQRNRLKDLPNLTFQLEVLLFEAGITNEETLRALGARASWLKMRAKN
KALSIKVLFALEGAIEGLHEAALPAGIRRELTEWFNALPEPQESRSSR

Nucleotide


Download         Length: 627 bp        

>NTDB_id=755217 OM418_RS07475 WP_023618860.1 1616030..1616656(+) (sxy/tfoX) [Enterobacter quasiroggenkampii strain WS12-3]
ATGAAAAAGATATCTTATGAACGGATTTATAAATCCCAGGAATACCTGTCCCCGTTGGGCGAGATTCATCATCGCGCGCT
GTTTGGCGGCTACACCCTGGCGGTGGATGATGCGGTCTTTGCCATGGTGTCCGATGGCGAACTTTATCTTCGTGCGTGTG
AGGAGAGTGCAAAATACTGTGTAAAAAACGCCTCCTCCTTTTTGACGTTGATGAAGCGAGGCAGACCGGTGCTGCTCAAC
TATTATCGTGTGGATGACGGGTTATGGCAGGACAGGGAGCGGTTGCTTCAGCTCTCCTCGTTTGCGCTCAGTGCGGCAAG
GAAAGAGCGCTACCAGCGTCATCAACGAAACCGTCTTAAGGATCTGCCGAACCTGACCTTTCAGCTTGAAGTCTTGCTCT
TTGAAGCCGGTATCACCAATGAAGAAACGCTGCGGGCGCTGGGTGCCAGAGCGAGCTGGCTGAAGATGCGGGCAAAGAAT
AAAGCGCTCAGTATTAAAGTTCTCTTTGCGCTGGAAGGGGCTATCGAAGGGCTGCATGAGGCGGCACTCCCGGCAGGCAT
CCGCCGGGAGCTGACGGAGTGGTTTAATGCGCTGCCTGAGCCACAGGAGAGTCGTTCCTCCAGGTAG

Domains

Predicted by InterproScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A155YQ93

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

58.128

97.596

0.567