Detailed information NTG0755196

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP58_RS05660
• Genome accession: NZ_CP124357
• Coordinates: 1181423..1182415 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0467
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1176423..1187415

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP58_RS05630 (QJP58_05630)	ispD	1176484..1177194 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP58_RS05635 (QJP58_05635)	ispF	1177194..1177673 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP58_RS05640 (QJP58_05640)	truD	1177670..1178719 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP58_RS05645 (QJP58_05645)	surE	1178700..1179461 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP58_RS05650 (QJP58_05650)	pcm	1179455..1180081 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP58_RS05655 (QJP58_05655)	nlpD	1180266..1181360 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP58_RS05660 (QJP58_05660)	rpoS	1181423..1182415 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP58_RS05665 (QJP58_05665)	-	1182586..1183137 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP58_RS05670 (QJP58_05670)	-	1183362..1184405 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP58_RS05675 (QJP58_05675)	ygbN	1184548..1185912 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP58_RS05680 (QJP58_05680)	ygbM	1186001..1186777 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=755196 QJP58_RS05660 WP_000081550.1 1181423..1182415(+) (rpoS) [Escherichia coli strain AVS0467]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=755196 QJP58_RS05660 WP_000081550.1 1181423..1182415(+) (rpoS) [Escherichia coli strain AVS0467]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715