Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   OM087_RS06050 Genome accession   NZ_CP110511
Coordinates   1224409..1225038 (-) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain ws5-3     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1219409..1230038
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM087_RS06035 (OM087_06020) helD 1219651..1221705 (-) 2055 WP_000420536.1 DNA helicase IV -
  OM087_RS06040 (OM087_06025) yccF 1221828..1222274 (+) 447 WP_001261235.1 YccF domain-containing protein -
  OM087_RS06045 (OM087_06030) yccS 1222284..1224446 (+) 2163 WP_000875046.1 YccS family putative transporter -
  OM087_RS06050 (OM087_06035) sxy/tfoX 1224409..1225038 (-) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  OM087_RS06055 (OM087_06040) sulA 1225257..1225766 (+) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  OM087_RS06060 (OM087_06045) ompA 1226123..1227175 (+) 1053 WP_001361736.1 porin OmpA -
  OM087_RS06065 (OM087_06050) matP 1227250..1227702 (-) 453 WP_000877158.1 macrodomain Ter protein MatP -
  OM087_RS06070 (OM087_06055) ycbZ 1227888..1229648 (+) 1761 WP_001585536.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=755126 OM087_RS06050 WP_000839153.1 1224409..1225038(-) (sxy/tfoX) [Escherichia coli strain ws5-3]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=755126 OM087_RS06050 WP_000839153.1 1224409..1225038(-) (sxy/tfoX) [Escherichia coli strain ws5-3]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1