Detailed information    

insolico Bioinformatically predicted

Overview

Name   recX   Type   Regulator
Locus tag   ONG97_RS13965 Genome accession   NZ_CP110483
Coordinates   2836849..2837643 (+) Length   264 a.a.
NCBI ID   WP_133536406.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   inhibit excessive RecA-mediated recombination (predicted from homology)   
Competence regulation

Genomic Context

Location: 2831849..2842643
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS13935 (ONG97_13935) trpCF 2832331..2833755 (+) 1425 WP_265114856.1 bifunctional indole-3-glycerol-phosphate synthase TrpC/phosphoribosylanthranilate isomerase TrpF -
  ONG97_RS13940 (ONG97_13940) trpB 2833733..2834938 (+) 1206 WP_265114857.1 tryptophan synthase subunit beta -
  ONG97_RS13945 (ONG97_13945) - 2834931..2835335 (+) 405 WP_035183857.1 hypothetical protein -
  ONG97_RS13950 (ONG97_13950) trpA 2835328..2836119 (+) 792 WP_014097355.1 tryptophan synthase subunit alpha -
  ONG97_RS13955 (ONG97_13955) - 2836378..2836560 (-) 183 WP_017551419.1 YfhD family protein -
  ONG97_RS13960 (ONG97_13960) - 2836639..2836761 (-) 123 WP_017552869.1 YfhE family protein -
  ONG97_RS13965 (ONG97_13965) recX 2836849..2837643 (+) 795 WP_133536406.1 recombination regulator RecX Regulator
  ONG97_RS13970 (ONG97_13970) - 2837646..2837963 (+) 318 WP_265114858.1 YfhH family protein -
  ONG97_RS13975 (ONG97_13975) - 2838054..2838212 (-) 159 WP_029141642.1 small, acid-soluble spore protein K -
  ONG97_RS13980 (ONG97_13980) - 2838299..2839279 (-) 981 WP_061575500.1 metal-dependent hydrolase -
  ONG97_RS13985 (ONG97_13985) mutY 2839459..2840550 (+) 1092 WP_019721542.1 A/G-specific adenine glycosylase -
  ONG97_RS13990 (ONG97_13990) - 2841169..2842626 (-) 1458 WP_265114859.1 glutamate synthase subunit beta -

Sequence

Protein


Download         Length: 264 a.a.        Molecular weight: 30846.57 Da        Isoelectric Point: 9.3837

>NTDB_id=755094 ONG97_RS13965 WP_133536406.1 2836849..2837643(+) (recX) [Heyndrickxia coagulans strain XY2]
MPVITKISLQKNNKERYNIFLDGKYRFSVDEEVLARYQLLKGKELDELDIEAILAEDDIRKGVNTAIRFLSYRMRSEKEV
RDDLIKKEFAPEVVRSVISKLYEMQYLDDAEFAASFVRTQMNTTHKGPVVINRELQQKGIAPELIEKALEIFDADQQVEH
ARALAEKLSRQHARLSEKLLKQKVKQGLTVKGYPPEVISAAMAALHVEKDEETEWKALLQHAEKAKRKYGKFSGYVYRQK
MKQFLYRKGFPMDLIERYLREEGD

Nucleotide


Download         Length: 795 bp        

>NTDB_id=755094 ONG97_RS13965 WP_133536406.1 2836849..2837643(+) (recX) [Heyndrickxia coagulans strain XY2]
GTGCCTGTCATTACAAAAATTTCGCTTCAAAAAAACAATAAAGAACGTTACAATATTTTTCTTGACGGAAAGTACCGGTT
CAGTGTTGATGAAGAAGTGCTGGCACGGTACCAGCTTTTAAAAGGAAAAGAATTGGATGAGCTTGATATTGAAGCGATCC
TTGCCGAGGATGATATCCGGAAAGGCGTCAATACCGCCATCCGTTTTCTTTCCTACCGGATGCGGTCGGAAAAAGAAGTG
CGTGATGATTTGATAAAAAAGGAATTTGCGCCGGAAGTCGTTCGGAGTGTCATATCAAAGCTTTATGAAATGCAGTATCT
TGATGATGCGGAATTTGCCGCAAGTTTCGTGCGGACACAAATGAATACAACGCATAAAGGGCCTGTTGTCATTAACAGGG
AACTTCAGCAAAAAGGCATTGCACCAGAGCTGATCGAAAAAGCGCTTGAAATTTTTGATGCTGATCAGCAAGTGGAACAT
GCCCGTGCCCTTGCAGAAAAACTTTCCAGGCAGCATGCCCGGTTGTCGGAGAAGCTTTTAAAGCAAAAAGTGAAGCAGGG
GCTTACAGTAAAAGGCTATCCGCCTGAAGTGATTTCCGCTGCGATGGCGGCGCTTCATGTTGAAAAGGATGAAGAAACGG
AATGGAAAGCACTTCTTCAGCATGCTGAAAAAGCAAAGCGCAAATACGGAAAGTTTTCGGGATATGTATACAGGCAAAAA
ATGAAGCAGTTTTTATACCGGAAAGGGTTCCCGATGGATTTGATAGAGCGCTATTTGCGGGAAGAGGGGGATTAA

Domains

Predicted by InterproScan.

RecX family (RecX_HTH2)

(84-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recX Bacillus subtilis subsp. subtilis str. 168

52.672

99.242

0.523