Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFA   Type   Machinery gene
Locus tag   ONG97_RS06935 Genome accession   NZ_CP110483
Coordinates   1307425..1308810 (-) Length   461 a.a.
NCBI ID   WP_265115584.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1302425..1313810
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS06905 (ONG97_06905) flgL 1302896..1303789 (-) 894 WP_013858614.1 flagellar hook-associated protein FlgL -
  ONG97_RS06910 (ONG97_06910) flgK 1303804..1305420 (-) 1617 WP_041818799.1 flagellar hook-associated protein FlgK -
  ONG97_RS06915 (ONG97_06915) - 1305443..1305913 (-) 471 WP_014095889.1 flagellar protein FlgN -
  ONG97_RS06920 (ONG97_06920) flgM 1305926..1306192 (-) 267 WP_014095890.1 flagellar biosynthesis anti-sigma factor FlgM -
  ONG97_RS06925 (ONG97_06925) - 1306263..1306658 (-) 396 WP_061086680.1 TIGR03826 family flagellar region protein -
  ONG97_RS06930 (ONG97_06930) - 1306725..1307432 (-) 708 WP_265115583.1 ComF family protein -
  ONG97_RS06935 (ONG97_06935) comFA 1307425..1308810 (-) 1386 WP_265115584.1 DEAD/DEAH box helicase Machinery gene
  ONG97_RS06940 (ONG97_06940) - 1309106..1309948 (-) 843 WP_265115585.1 DegV family protein -
  ONG97_RS06945 (ONG97_06945) - 1310514..1311938 (+) 1425 WP_265115586.1 amino acid permease -
  ONG97_RS06950 (ONG97_06950) - 1312219..1312902 (-) 684 WP_026684742.1 response regulator transcription factor -

Sequence

Protein


Download         Length: 461 a.a.        Molecular weight: 51624.87 Da        Isoelectric Point: 8.6655

>NTDB_id=755079 ONG97_RS06935 WP_265115584.1 1307425..1308810(-) (comFA) [Heyndrickxia coagulans strain XY2]
MPSVFSEQLQHHLAGRILLEPEIPFSPELVEQHLKQGWIRAEPAIQGEFPHCVCLRCGNRAPHLFAEFPCAHCGKTSIYC
RNCLMMGRVTACKPLFTWAGPAPAFHPPRHPLHWEGTLSEGQQAASEAVKIAILQKNELLVWAVCGAGKTEVLFNGIEAA
LANGERVCIATPRTDVVLELAPRFRRVFPDIPIAALYGGSPDRHKWAQLVISTTHQLYRFASAFDAVIVDEVDAFPYTFD
ETLQRAVQKAAKDRCARIYLTATPGETWQLECKAGKRPFVTIPARYHRKPLPVPIFKWAGNWRRKFEKGQLPVPVEAWVK
KRLETGKQALLFLPNIRLMKKAEPVFKQLHPSIESVHAEDPERKEKVEKMRARETPLLLTTTILERGVTFPDIDVCVVGA
EDAIFTEAALVQIAGRAGRSADFPNGDVTFFHYGKSNAMVKAQRHILSMNEEAGKRGLLDA

Nucleotide


Download         Length: 1386 bp        

>NTDB_id=755079 ONG97_RS06935 WP_265115584.1 1307425..1308810(-) (comFA) [Heyndrickxia coagulans strain XY2]
TTGCCTTCTGTTTTCTCCGAACAGCTTCAACACCACCTCGCAGGGAGGATCCTGCTCGAACCGGAAATCCCTTTTTCGCC
GGAACTAGTCGAACAGCACTTAAAACAAGGCTGGATCCGCGCTGAGCCGGCGATTCAGGGCGAATTCCCGCACTGTGTCT
GCTTGCGCTGCGGCAACCGCGCGCCGCATCTTTTTGCCGAATTCCCTTGCGCCCACTGCGGGAAAACGAGCATCTATTGC
CGGAACTGCCTGATGATGGGGCGGGTTACCGCATGCAAGCCGCTTTTCACATGGGCAGGCCCTGCGCCCGCATTCCACCC
GCCCCGGCACCCGCTCCATTGGGAAGGGACCCTCTCTGAAGGGCAGCAGGCCGCATCCGAAGCGGTCAAAATAGCCATTC
TCCAAAAAAATGAGCTCTTGGTTTGGGCGGTTTGCGGAGCAGGTAAAACAGAGGTCCTTTTTAACGGGATTGAAGCGGCG
CTTGCAAACGGCGAACGCGTCTGCATCGCGACACCAAGGACAGATGTCGTCCTTGAACTTGCCCCCCGCTTCCGCCGCGT
TTTCCCGGATATTCCGATTGCCGCGCTCTACGGCGGCAGCCCTGACCGCCATAAATGGGCGCAGCTCGTGATCTCCACTA
CCCACCAGCTGTACCGCTTCGCATCTGCTTTCGATGCCGTAATTGTGGATGAGGTGGACGCTTTTCCGTATACTTTCGAT
GAAACGCTGCAGCGCGCCGTCCAAAAAGCGGCAAAAGATAGGTGCGCCCGCATTTATCTTACCGCAACGCCGGGTGAAAC
ATGGCAGCTTGAATGCAAGGCAGGCAAGCGCCCGTTTGTCACGATCCCGGCCCGTTACCACCGCAAGCCCCTCCCCGTTC
CTATATTCAAATGGGCAGGCAACTGGCGGAGAAAGTTTGAAAAAGGACAGCTCCCGGTTCCAGTTGAAGCATGGGTAAAA
AAGAGACTTGAAACCGGAAAACAGGCGCTTCTTTTTCTCCCGAACATCCGCCTCATGAAAAAAGCAGAACCGGTTTTTAA
ACAACTGCATCCGTCGATTGAATCGGTGCACGCAGAAGACCCGGAACGGAAAGAAAAAGTGGAAAAGATGCGCGCCCGCG
AAACGCCGCTTTTGCTGACGACGACCATTCTTGAACGCGGCGTCACGTTCCCGGACATTGATGTCTGTGTCGTCGGGGCG
GAAGATGCCATTTTTACGGAAGCCGCCCTCGTCCAGATCGCGGGCCGGGCTGGGAGAAGCGCCGATTTCCCAAATGGGGA
TGTTACGTTCTTCCATTATGGAAAATCAAATGCGATGGTGAAAGCACAGCGCCATATTCTCTCCATGAATGAAGAAGCGG
GAAAGCGGGGGTTGCTCGATGCATGA

Domains

Predicted by InterproScan.

Type III restriction enzyme, res subunit (ResIII)

(118-265)

Helicase conserved C-terminal domain (Helicase_C)

(322-420)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFA Bacillus subtilis subsp. subtilis str. 168

49.669

98.265

0.488
  comFA Latilactobacillus sakei subsp. sakei 23K

40.238

91.106

0.367