Detailed information    

insolico Bioinformatically predicted

Overview

Name   ceuB   Type   Machinery gene
Locus tag   ONG97_RS06740 Genome accession   NZ_CP110483
Coordinates   1261520..1262470 (-) Length   316 a.a.
NCBI ID   WP_061086704.1    Uniprot ID   A0A133KU06
Organism   Heyndrickxia coagulans strain XY2     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1256520..1267470
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS06710 (ONG97_06710) - 1257169..1257861 (-) 693 WP_019721718.1 response regulator transcription factor -
  ONG97_RS06715 (ONG97_06715) - 1257972..1258274 (-) 303 WP_265115566.1 DUF5316 domain-containing protein -
  ONG97_RS06720 (ONG97_06720) - 1258579..1258815 (+) 237 WP_026104642.1 4Fe-4S binding protein -
  ONG97_RS06725 (ONG97_06725) - 1258872..1259810 (-) 939 WP_265115567.1 siderophore ABC transporter substrate-binding protein -
  ONG97_RS06730 (ONG97_06730) - 1259825..1260583 (-) 759 WP_029142522.1 ABC transporter ATP-binding protein -
  ONG97_RS06735 (ONG97_06735) - 1260577..1261527 (-) 951 WP_265115568.1 iron chelate uptake ABC transporter family permease subunit -
  ONG97_RS06740 (ONG97_06740) ceuB 1261520..1262470 (-) 951 WP_061086704.1 ABC transporter permease Machinery gene
  ONG97_RS06745 (ONG97_06745) - 1262730..1263917 (-) 1188 WP_367616803.1 PDZ domain-containing protein -
  ONG97_RS06750 (ONG97_06750) - 1264183..1265619 (-) 1437 WP_265115569.1 S41 family peptidase -
  ONG97_RS06755 (ONG97_06755) - 1266023..1267006 (-) 984 WP_265115570.1 homoserine dehydrogenase -

Sequence

Protein


Download         Length: 316 a.a.        Molecular weight: 34465.57 Da        Isoelectric Point: 9.9995

>NTDB_id=755078 ONG97_RS06740 WP_061086704.1 1261520..1262470(-) (ceuB) [Heyndrickxia coagulans strain XY2]
MKKRYLVPLLAVLSIISIFIGAENIRPADMLHLSREQTEILLASRLPRLISIIIAGMGMSICGLVMQQLTRNKFVSPTTA
GTMDCARLGILVAIILFSAANPLIKIAVAFCFALAGTLLFMKILGRIKWNDTIFIPLVGLMFGNIVSSVSTFFAYKYDLV
QSLSSWLQGDFSGVLKGKYEMLYLAVPAVLVAYVFANRFTVAGMGEDFAKNLGLNYKQVVNLGLVLVALITSATVLTVGT
IPFLGLIIPNIVSIYRGDHMKKSITVTALLGAVFLLFCDILGRLVIYPYEVPISLTAGIIGSGIFVYLLLRRHAYA

Nucleotide


Download         Length: 951 bp        

>NTDB_id=755078 ONG97_RS06740 WP_061086704.1 1261520..1262470(-) (ceuB) [Heyndrickxia coagulans strain XY2]
ATGAAAAAAAGATATTTAGTGCCCCTGCTTGCCGTGCTGTCCATCATTTCGATTTTTATCGGCGCGGAAAATATCAGGCC
GGCGGATATGCTCCATTTAAGCAGGGAGCAGACAGAAATTTTGCTGGCAAGCCGCCTGCCGCGCCTGATCAGCATCATCA
TTGCGGGCATGGGCATGAGCATCTGCGGCCTTGTGATGCAGCAGCTGACGAGAAATAAATTTGTCTCCCCGACGACAGCC
GGCACGATGGACTGTGCCCGGCTCGGCATTTTGGTTGCGATCATCCTGTTTTCTGCGGCAAACCCGCTGATCAAAATTGC
GGTTGCTTTTTGCTTTGCGCTGGCTGGCACCTTGCTGTTCATGAAAATACTGGGCCGGATTAAATGGAACGATACAATTT
TCATCCCGCTTGTCGGGCTGATGTTTGGCAATATCGTAAGTTCTGTATCTACTTTTTTTGCGTATAAATACGACTTAGTC
CAGAGCCTTTCCTCATGGCTGCAAGGCGATTTTTCAGGCGTGCTGAAAGGGAAGTACGAGATGCTTTATTTAGCAGTTCC
GGCCGTTTTGGTCGCGTATGTGTTTGCCAACCGGTTTACGGTCGCCGGCATGGGGGAAGATTTTGCCAAAAATCTTGGCC
TGAATTACAAGCAGGTGGTCAACCTCGGCCTTGTCCTTGTCGCGCTGATTACTTCGGCAACGGTACTGACAGTCGGCACT
ATCCCGTTTCTGGGCTTAATTATTCCAAACATTGTGTCCATTTACCGTGGCGACCATATGAAAAAAAGCATTACGGTTAC
GGCGCTGCTTGGGGCGGTGTTCCTGCTGTTTTGCGATATTTTGGGGCGCCTTGTCATTTATCCATATGAAGTGCCGATCA
GTTTAACAGCCGGCATCATCGGGAGTGGCATTTTTGTATATTTGCTGCTGAGGAGGCACGCTTATGCATAG

Domains

Predicted by InterproScan.

FecCD transport family (FecCD)

(9-311)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A133KU06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ceuB Campylobacter jejuni subsp. jejuni 81-176

51.757

99.051

0.513