Detailed information    

insolico Bioinformatically predicted

Overview

Name   pepF   Type   Regulator
Locus tag   ONG97_RS05965 Genome accession   NZ_CP110483
Coordinates   1108739..1110553 (-) Length   604 a.a.
NCBI ID   WP_265115502.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   degradation of XIP; competence shut-off (predicted from homology)   
Competence regulation

Genomic Context

Location: 1103739..1115553
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS05935 (ONG97_05935) - 1104292..1104675 (-) 384 WP_035189766.1 hypothetical protein -
  ONG97_RS05940 (ONG97_05940) - 1104812..1105396 (+) 585 WP_035189769.1 CYTH domain-containing protein -
  ONG97_RS05945 (ONG97_05945) - 1105393..1106172 (+) 780 WP_265115501.1 lytic transglycosylase domain-containing protein -
  ONG97_RS05950 (ONG97_05950) - 1106610..1107011 (+) 402 WP_013858794.1 globin -
  ONG97_RS05955 (ONG97_05955) - 1107008..1107865 (+) 858 WP_302469492.1 ClpXP adapter SpxH family protein -
  ONG97_RS05960 (ONG97_05960) - 1108156..1108347 (+) 192 WP_017553961.1 hypothetical protein -
  ONG97_RS05965 (ONG97_05965) pepF 1108739..1110553 (-) 1815 WP_265115502.1 oligoendopeptidase F Regulator
  ONG97_RS05970 (ONG97_05970) - 1110621..1111805 (-) 1185 WP_265115503.1 competence protein CoiA -
  ONG97_RS05975 (ONG97_05975) mecA 1112112..1112771 (-) 660 WP_265115504.1 adaptor protein MecA -
  ONG97_RS05980 (ONG97_05980) spxA 1113135..1113530 (-) 396 WP_013858789.1 transcriptional regulator SpxA -
  ONG97_RS05985 (ONG97_05985) - 1113809..1114750 (-) 942 WP_029141810.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 604 a.a.        Molecular weight: 69334.02 Da        Isoelectric Point: 5.1288

>NTDB_id=755069 ONG97_RS05965 WP_265115502.1 1108739..1110553(-) (pepF) [Heyndrickxia coagulans strain XY2]
MENGKKVHALPSRDEVRESLTWRLEDIFPSDEDWNKEYEAVKEKLAGAASYQGKLGESAEQLYHALKFQDEVTERFGKLY
TYAHMRYDQDTTNAFYQGMDSKAKSLAAQVGSAFAFVVPEILSIEEAKLNQFLEAYVPLQLYRHALEEINEMRPHILSKE
EEALLAQVSEVLNTSSTTFGMLNNADLEFPTVIDENGNEVQITHGRFTRLLESKDRRVRKEAFQKLYATYKKFTNTFAST
LSGQVKKNNVVAQIRHYHSAREAALAANHIPEKVYDQLVETVNRNLGLLQRYVALRKKVLQLDEVHMYDLYTPLVQDADM
EVTYEKAKEIVLDGLHPLGGEYQGILQQAFENRWIDVVENKGKRSGAYSSGAYGTNPYILLNWQDNIDNVFTLAHELGHS
VHSYYTRKNQPYPYGDYSIFVAEVASTCNEALLNDYLLKTIKDEKQRIYLLNHYLEGFRGTVFRQTMFAEFEHLIHQKAQ
HGEALTAELLTDEYYKLNQKYFGTDITIDQEIGLEWARIPHFYYDYYVYQYATGFSAATALSKQILEEGEPAVKRYIGYL
SAGSSEYPIEVLKKAGVDMASPQPVEDALKVFEEKLTEMENLLG

Nucleotide


Download         Length: 1815 bp        

>NTDB_id=755069 ONG97_RS05965 WP_265115502.1 1108739..1110553(-) (pepF) [Heyndrickxia coagulans strain XY2]
ATGGAAAACGGGAAAAAAGTACACGCGTTGCCAAGCCGGGACGAGGTCCGTGAATCATTAACCTGGAGGCTTGAGGATAT
TTTTCCAAGCGACGAAGACTGGAATAAAGAATACGAAGCCGTAAAAGAAAAACTGGCCGGTGCCGCTTCTTATCAGGGGA
AACTTGGCGAAAGCGCGGAACAGCTTTATCATGCGCTAAAGTTCCAGGATGAAGTGACGGAAAGGTTCGGCAAGCTGTAT
ACATACGCGCATATGCGTTATGACCAGGACACAACGAATGCCTTTTACCAGGGGATGGACAGCAAAGCGAAAAGCCTTGC
CGCCCAGGTTGGGAGCGCGTTTGCGTTTGTGGTGCCGGAAATTCTGTCGATTGAGGAAGCGAAACTGAACCAATTCCTGG
AAGCTTATGTGCCGCTTCAGCTGTACCGGCATGCATTGGAAGAAATTAATGAAATGCGCCCGCATATTTTATCTAAGGAA
GAAGAAGCATTGCTCGCACAGGTTTCGGAAGTGCTGAATACTTCCAGCACCACTTTCGGCATGCTCAACAATGCAGACCT
TGAGTTCCCGACAGTAATCGATGAAAACGGCAATGAAGTGCAGATCACGCACGGCCGCTTTACACGCCTGCTGGAAAGCA
AAGACCGCCGCGTGCGCAAAGAGGCATTCCAAAAATTGTACGCGACCTACAAAAAATTCACCAACACGTTTGCGAGCACG
CTCAGCGGCCAGGTGAAAAAGAACAATGTTGTAGCGCAAATCCGCCATTACCATTCGGCGCGTGAAGCTGCCCTTGCGGC
AAACCACATTCCGGAAAAAGTGTACGACCAGCTCGTGGAAACGGTGAACCGAAATCTCGGTTTGCTGCAGCGGTATGTTG
CTTTGCGCAAAAAAGTGCTGCAGCTTGATGAAGTGCATATGTACGATCTGTATACGCCACTTGTCCAGGACGCCGATATG
GAAGTGACATATGAAAAAGCGAAAGAGATCGTGCTTGACGGACTCCATCCGCTCGGCGGGGAATACCAGGGCATTTTACA
GCAGGCGTTTGAAAACCGCTGGATTGACGTGGTGGAAAACAAAGGCAAGCGGAGCGGGGCCTATTCTTCGGGCGCTTACG
GGACCAATCCGTACATTTTGCTGAACTGGCAGGACAATATTGACAATGTGTTCACCCTCGCGCATGAGCTCGGCCACAGC
GTCCACAGCTATTACACGCGGAAGAACCAGCCGTATCCGTACGGGGATTATTCCATTTTTGTGGCGGAAGTGGCTTCCAC
GTGCAATGAGGCGCTGTTGAACGATTATTTGTTAAAAACGATCAAAGACGAGAAACAGCGGATTTACTTATTGAATCATT
ATCTGGAAGGTTTCCGCGGGACGGTCTTCCGCCAGACGATGTTTGCCGAATTTGAGCATCTGATCCATCAAAAAGCGCAA
CATGGCGAAGCGCTGACAGCGGAACTTTTGACAGATGAGTATTATAAGCTGAACCAAAAATACTTTGGCACGGATATCAC
CATCGATCAGGAAATCGGGCTTGAGTGGGCACGCATTCCGCATTTTTATTACGATTATTATGTATATCAGTATGCGACCG
GCTTCAGCGCCGCGACCGCGTTAAGCAAACAAATCCTCGAAGAAGGGGAACCGGCTGTCAAACGCTACATCGGCTATTTA
AGCGCCGGCAGCTCGGAATATCCGATTGAAGTATTGAAAAAAGCAGGCGTCGATATGGCGTCGCCCCAGCCGGTCGAAGA
TGCGTTAAAAGTATTTGAAGAAAAATTAACGGAAATGGAAAACTTGCTCGGATAA

Domains

Predicted by InterproScan.

Oligopeptidase F (Peptidase_M3_N)

(120-189)

Peptidase family M3 (Peptidase_M3)

(210-590)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pepF Streptococcus salivarius strain HSISS4

50.507

98.013

0.495