Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   ONG97_RS01950 Genome accession   NZ_CP110483
Coordinates   333590..335293 (+) Length   567 a.a.
NCBI ID   WP_013859600.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 328590..340293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS01925 (ONG97_01925) - 328985..329212 (+) 228 WP_013859605.1 exodeoxyribonuclease VII small subunit -
  ONG97_RS01930 (ONG97_01930) - 329215..330084 (+) 870 WP_019720614.1 polyprenyl synthetase family protein -
  ONG97_RS01935 (ONG97_01935) dxs 330233..332134 (+) 1902 WP_061566878.1 1-deoxy-D-xylulose-5-phosphate synthase -
  ONG97_RS01940 (ONG97_01940) - 332135..332959 (+) 825 WP_013859602.1 TlyA family RNA methyltransferase -
  ONG97_RS01945 (ONG97_01945) argR 333123..333572 (+) 450 WP_013859601.1 transcriptional regulator ArgR -
  ONG97_RS01950 (ONG97_01950) recN 333590..335293 (+) 1704 WP_013859600.1 DNA repair protein RecN Machinery gene
  ONG97_RS01955 (ONG97_01955) spoIVB 335473..336756 (+) 1284 WP_019720618.1 SpoIVB peptidase -
  ONG97_RS01960 (ONG97_01960) spo0A 336923..337708 (+) 786 WP_061566875.1 sporulation transcription factor Spo0A -
  ONG97_RS01965 (ONG97_01965) - 337832..338575 (+) 744 WP_061575203.1 glycerophosphodiester phosphodiesterase -
  ONG97_RS01970 (ONG97_01970) - 338585..338827 (-) 243 WP_118497727.1 DUF2627 domain-containing protein -
  ONG97_RS01975 (ONG97_01975) - 338963..339382 (+) 420 WP_265115210.1 Fis family transcriptional regulator -
  ONG97_RS01980 (ONG97_01980) - 339427..339579 (+) 153 WP_265115211.1 helix-turn-helix domain-containing protein -

Sequence

Protein


Download         Length: 567 a.a.        Molecular weight: 64439.28 Da        Isoelectric Point: 4.8255

>NTDB_id=755059 ONG97_RS01950 WP_013859600.1 333590..335293(+) (recN) [Heyndrickxia coagulans strain XY2]
MLQELSIKNFAIIDALTLSFEAGLTVLTGETGAGKSIIIDAIQLLTGGRGSSEFVRHGENRAEIEGLFLVEDGHPCMERA
REFGIEIEEGMVILRRDISKTGKSVCRINGKLVTISVLREIGSTLIDIHSQHETQELLNETYHLPLLDQYGQSEIETALL
DYEKLYKKYEAVYGRLKRMNENDQQLAQRLDLIQFQHEEIQNAGLRLHEDEELAEEKRKLVNFERLFESLNTGYEALAGE
QHGLDWLSLAMSHLETAAEVDGGLSDILESVQSCFYTLEDMSRSIRSRLDGLEFDPERLNVIEARLNEINQLKRKYGSTI
EEILEYGSKIEEEIESIVNRDHHVELLQEELQTVKRDLYLEAKQLSDLRKKWAGKLTENIHSELKQLYMDKTKFEVRFLA
AADDYYEADDIPFRRDGLDQVEFYISTNPGEPLKPLAKTASGGELSRIMLALKTIFSRHQGITSVIFDEVDTGVSGRVAQ
AIAEKIYHISVHSQVLCITHLPQVAAMADTHLLIMKETEKGRTRTKVKPLGQEEKIKEIGRMISGVEMTELTRQHAKELL
ELAEAIK

Nucleotide


Download         Length: 1704 bp        

>NTDB_id=755059 ONG97_RS01950 WP_013859600.1 333590..335293(+) (recN) [Heyndrickxia coagulans strain XY2]
TTGCTGCAGGAATTATCGATTAAAAATTTTGCCATTATTGATGCGCTAACCCTCTCATTTGAAGCCGGGCTGACTGTCCT
GACAGGGGAGACCGGTGCCGGCAAATCGATTATTATCGATGCGATCCAGCTTTTAACAGGCGGGAGAGGGTCATCGGAGT
TTGTCCGGCACGGGGAAAACCGTGCTGAGATTGAGGGTTTATTTCTGGTCGAAGACGGCCATCCGTGTATGGAGCGCGCC
CGCGAATTCGGCATTGAGATTGAGGAAGGCATGGTGATTTTGCGGCGCGATATATCGAAAACAGGGAAAAGCGTCTGCCG
CATCAACGGAAAACTTGTGACGATTTCGGTGCTGCGCGAAATCGGGTCGACTTTAATTGATATCCACAGCCAGCACGAAA
CGCAGGAACTGCTGAACGAAACGTACCATCTGCCGCTGCTTGACCAGTACGGGCAAAGCGAGATCGAAACGGCCCTCCTT
GATTACGAAAAATTATATAAAAAATACGAAGCCGTTTACGGGCGGTTAAAAAGAATGAATGAAAACGACCAGCAGCTTGC
CCAGCGCCTTGACCTCATCCAGTTCCAGCATGAGGAAATCCAAAACGCAGGGCTGAGGCTGCATGAAGACGAGGAATTAG
CGGAAGAAAAACGAAAACTCGTCAATTTTGAACGGCTGTTTGAATCATTGAACACGGGGTATGAAGCGCTTGCCGGGGAA
CAGCACGGCCTCGACTGGCTCAGCCTTGCCATGAGCCATCTTGAAACCGCGGCCGAAGTGGATGGCGGGCTCTCTGACAT
TTTGGAATCCGTCCAAAGTTGTTTTTATACGCTCGAAGACATGTCCCGCTCGATCCGTTCCCGGCTTGACGGGCTTGAAT
TTGACCCGGAACGGCTTAACGTGATTGAAGCGCGGCTGAATGAGATTAACCAGTTAAAACGAAAATACGGCAGCACGATC
GAAGAAATTCTGGAATACGGGTCCAAAATTGAAGAAGAAATTGAATCGATCGTAAACCGCGACCATCATGTAGAGCTTTT
GCAAGAAGAACTGCAGACGGTAAAACGCGATCTTTATTTGGAAGCCAAGCAGCTCAGCGATTTGCGCAAAAAATGGGCAG
GAAAGCTGACTGAAAATATCCATTCCGAATTAAAGCAGCTGTATATGGATAAAACAAAGTTTGAAGTCCGTTTTCTTGCC
GCTGCTGATGATTATTATGAGGCGGATGACATTCCGTTTAGGCGCGACGGGCTCGATCAGGTTGAATTTTACATTTCCAC
CAACCCGGGCGAACCGCTAAAACCGCTCGCAAAAACTGCTTCAGGCGGGGAATTGTCGCGGATTATGCTGGCATTAAAAA
CGATTTTTTCCCGGCACCAGGGGATCACTTCCGTCATTTTCGACGAAGTGGACACCGGCGTAAGCGGCCGCGTAGCACAG
GCGATTGCGGAAAAAATTTACCATATCTCGGTCCATTCGCAAGTTCTTTGCATTACCCATCTGCCGCAGGTTGCCGCCAT
GGCGGACACGCATCTGCTGATCATGAAAGAAACCGAAAAGGGGAGAACGCGGACAAAAGTGAAGCCTTTGGGGCAGGAAG
AAAAAATTAAAGAAATCGGCCGCATGATTTCAGGTGTTGAAATGACAGAGCTGACAAGACAGCATGCGAAAGAGCTCCTC
GAACTGGCCGAAGCGATAAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-518)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

59.337

100

0.6