Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGA   Type   Machinery gene
Locus tag   ONG97_RS01720 Genome accession   NZ_CP110483
Coordinates   295381..296505 (+) Length   374 a.a.
NCBI ID   WP_013859647.1    Uniprot ID   -
Organism   Heyndrickxia coagulans strain XY2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 290381..301505
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONG97_RS01685 (ONG97_01685) - 290401..291567 (+) 1167 WP_265115197.1 rhomboid family intramembrane serine protease -
  ONG97_RS01690 (ONG97_01690) - 291876..292097 (+) 222 WP_013859652.1 YqgQ family protein -
  ONG97_RS01695 (ONG97_01695) - 292090..293058 (+) 969 WP_265115198.1 ROK family glucokinase -
  ONG97_RS01700 (ONG97_01700) - 293157..293330 (-) 174 WP_017554326.1 DUF2759 domain-containing protein -
  ONG97_RS01705 (ONG97_01705) - 293460..294089 (+) 630 WP_265115199.1 MBL fold metallo-hydrolase -
  ONG97_RS01710 (ONG97_01710) - 294159..294401 (-) 243 WP_014098019.1 DUF2626 domain-containing protein -
  ONG97_RS01715 (ONG97_01715) - 294479..295186 (-) 708 WP_265115200.1 metalloregulator ArsR/SmtB family transcription factor -
  ONG97_RS01720 (ONG97_01720) comGA 295381..296505 (+) 1125 WP_013859647.1 competence type IV pilus ATPase ComGA Machinery gene
  ONG97_RS01725 (ONG97_01725) comGB 296507..297469 (+) 963 WP_265115201.1 competence type IV pilus assembly protein ComGB -
  ONG97_RS01730 (ONG97_01730) comGC 297537..297848 (+) 312 WP_013859645.1 competence type IV pilus major pilin ComGC -
  ONG97_RS01735 (ONG97_01735) comGD 297845..298288 (+) 444 WP_019720594.1 competence type IV pilus minor pilin ComGD -
  ONG97_RS01740 (ONG97_01740) - 298275..298583 (+) 309 WP_017553561.1 type II secretion system protein -
  ONG97_RS01745 (ONG97_01745) comGF 298546..299028 (+) 483 WP_035187950.1 competence type IV pilus minor pilin ComGF -
  ONG97_RS01750 (ONG97_01750) comGG 299025..299393 (+) 369 WP_207368177.1 competence type IV pilus minor pilin ComGG -
  ONG97_RS01755 (ONG97_01755) - 299390..299947 (+) 558 WP_019720597.1 shikimate kinase -
  ONG97_RS01760 (ONG97_01760) - 299934..300110 (+) 177 WP_014098029.1 YqzE family protein -
  ONG97_RS01765 (ONG97_01765) - 300143..300934 (-) 792 WP_265115202.1 YqhG family protein -

Sequence

Protein


Download         Length: 374 a.a.        Molecular weight: 42378.89 Da        Isoelectric Point: 9.4407

>NTDB_id=755058 ONG97_RS01720 WP_013859647.1 295381..296505(+) (comGA) [Heyndrickxia coagulans strain XY2]
MSVEKIAELLIGQAVKNNVTDVHIVPKEKHYHVQFRQYGRLYPHRNLSAKAGERLISHLKFMSSMDISEKRKPQSGSFAM
NVLQQTISLRISTLPTSLSKESLVIRILPHEEQFQLSQISLFPSSTKKLMALLNHSHGMLIFSGPTGSGKSTTMYTLVEH
CAKRFLRNVITLEDPVEKQSDSFLQVQVNEKAGITYSTGLKAILRHDPDIILVGEIRDAETARIAVRASLTGHLVLTTLH
TRDAKGAIYRMMEFGVSIHEMEQTLLAVSAQRLITLRCPVCGGIRCPHDSQDCPRSREKRQTAVYELLYGKNLQRVLKEA
KGEQVYYHYPTLKEWLRKGIVLGYISEEEYHRWIAEEEEADKPQTAGALSYPGR

Nucleotide


Download         Length: 1125 bp        

>NTDB_id=755058 ONG97_RS01720 WP_013859647.1 295381..296505(+) (comGA) [Heyndrickxia coagulans strain XY2]
ATGTCAGTTGAAAAAATTGCGGAACTTTTGATCGGACAGGCGGTAAAAAACAATGTGACCGATGTCCATATCGTTCCGAA
AGAAAAGCATTACCATGTCCAGTTCCGGCAGTACGGAAGGCTGTACCCCCACCGCAACCTTTCCGCGAAAGCCGGGGAAA
GGCTGATATCCCATTTGAAATTTATGTCTTCCATGGATATCAGTGAAAAACGGAAACCCCAAAGCGGGTCGTTTGCCATG
AACGTTTTGCAGCAGACGATCTCCTTAAGGATTTCGACGCTGCCAACCTCTCTTTCCAAAGAGAGCCTCGTCATCCGGAT
TTTGCCCCACGAAGAACAATTCCAGCTCAGCCAAATTTCACTTTTTCCATCGAGCACGAAAAAATTAATGGCGCTATTAA
ACCATTCGCACGGCATGCTGATTTTCAGCGGTCCGACCGGAAGCGGCAAGTCGACGACGATGTATACGCTTGTTGAGCAC
TGCGCAAAACGGTTTTTACGGAATGTAATTACACTGGAAGACCCTGTTGAAAAACAAAGCGATTCGTTTTTGCAGGTGCA
GGTGAATGAAAAAGCAGGCATTACTTATAGCACAGGGCTGAAAGCAATTTTGCGCCATGATCCGGATATTATCCTGGTGG
GGGAAATCCGTGATGCCGAAACAGCAAGAATTGCGGTCCGCGCATCGCTCACCGGCCATCTTGTCCTGACGACTTTGCAT
ACGCGTGACGCAAAGGGCGCGATTTACAGGATGATGGAATTCGGCGTGAGCATCCACGAAATGGAGCAGACTTTGCTCGC
AGTCAGCGCACAGCGGCTGATTACATTGCGATGCCCGGTATGCGGTGGGATCCGCTGTCCGCATGATTCGCAAGATTGCC
CACGCAGCCGAGAAAAGCGGCAAACCGCGGTATATGAGCTGCTGTACGGGAAAAATTTGCAGCGAGTGTTGAAAGAAGCA
AAGGGGGAACAAGTCTACTATCATTATCCGACACTGAAAGAATGGCTCAGAAAGGGGATTGTGCTTGGATACATTTCTGA
AGAAGAGTATCACCGCTGGATTGCCGAAGAGGAAGAAGCGGATAAGCCTCAAACTGCAGGGGCGCTTTCTTACCCGGGTC
GGTGA

Domains

Predicted by InterproScan.

Type II/IV secretion system protein (T2SSE)

(10-274)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGA Bacillus subtilis subsp. subtilis str. 168

54.469

95.722

0.521