Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   OJ965_RS18115 Genome accession   NZ_CP110473
Coordinates   3338911..3340293 (-) Length   460 a.a.
NCBI ID   WP_009092261.1    Uniprot ID   A0A5M7PRE4
Organism   Pantoea anthophila strain CL1     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3333911..3345293
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OJ965_RS18100 (OJ965_18095) - 3335383..3336279 (-) 897 WP_058957759.1 LysR family transcriptional regulator -
  OJ965_RS18105 (OJ965_18100) - 3336498..3337499 (+) 1002 WP_009092259.1 zinc-binding alcohol dehydrogenase family protein -
  OJ965_RS18110 (OJ965_18105) nadR 3337594..3338835 (-) 1242 WP_009092260.1 multifunctional transcriptional regulator/nicotinamide-nucleotide adenylyltransferase/ribosylnicotinamide kinase NadR -
  OJ965_RS18115 (OJ965_18110) radA 3338911..3340293 (-) 1383 WP_009092261.1 DNA repair protein RadA Machinery gene
  OJ965_RS18120 (OJ965_18115) serB 3340307..3341284 (-) 978 WP_265137267.1 phosphoserine phosphatase -
  OJ965_RS18125 (OJ965_18120) - 3341392..3342042 (+) 651 WP_009092263.1 YtjB family periplasmic protein -
  OJ965_RS18130 (OJ965_18125) yjjG 3342447..3343127 (-) 681 WP_009092264.1 pyrimidine 5'-nucleotidase -
  OJ965_RS18135 (OJ965_18130) rimI 3343146..3343586 (-) 441 WP_009092266.1 ribosomal protein S18-alanine N-acetyltransferase -
  OJ965_RS18140 (OJ965_18135) - 3343558..3343968 (-) 411 WP_265137272.1 DNA polymerase III subunit psi -
  OJ965_RS18145 (OJ965_18140) rsmC 3344074..3345105 (+) 1032 WP_058957763.1 16S rRNA (guanine(1207)-N(2))-methyltransferase RsmC -

Sequence

Protein


Download         Length: 460 a.a.        Molecular weight: 49351.99 Da        Isoelectric Point: 7.4220

>NTDB_id=755049 OJ965_RS18115 WP_009092261.1 3338911..3340293(-) (radA) [Pantoea anthophila strain CL1]
MAKAAKRAFVCNECGADYPRWQGQCSACHAWNTITEVRIAASPAAARNERLSGYAGSAGTSRVQKLSEISLEALPRFSTT
FKEFDRVLGGGVVPGSAILIGGSPGAGKSTLLLQVMCRLSEGMKTLYVTGEESLQQVAMRAHRLGLPTENVNMLSETSIE
QICLIAEQEQPQLMVIDSIQVMHMAEIQSSPGSVAQVRETAAYLTRFAKTRGVAIIMVGHVTKDGSLAGPKVLEHCIDCS
VLLDGDADSRFRTLRSHKNRFGAVNELGVFAMTEQGMREVSNPSAIFLSRGEEITSGSSVMVLWEGTRPLLVEIQALVDH
SMMGNPRRVAVGLEQNRLAILLAVLHRHGGLQMADQDVFVNVVGGVKVTETSADLALMLSMVSSLRDRPLPQDLVIFGEV
GLAGEIRPVPSGQERISEAAKHGFKRAIVPAGNAPKKPIAGMQVFSAKKLADALAILDDL

Nucleotide


Download         Length: 1383 bp        

>NTDB_id=755049 OJ965_RS18115 WP_009092261.1 3338911..3340293(-) (radA) [Pantoea anthophila strain CL1]
TTGGCCAAAGCGGCAAAACGCGCATTTGTCTGTAACGAATGCGGCGCAGATTACCCACGCTGGCAGGGGCAGTGCAGCGC
CTGTCACGCCTGGAACACCATCACCGAGGTGCGCATTGCCGCCTCACCCGCGGCTGCGCGCAACGAGCGCCTGAGCGGCT
ATGCCGGCAGCGCCGGCACCAGCCGGGTGCAGAAACTGTCAGAAATCAGCCTGGAGGCACTCCCGCGCTTCTCCACCACC
TTTAAAGAGTTTGATCGGGTGCTGGGCGGCGGCGTGGTGCCGGGCAGTGCGATTCTGATTGGCGGCAGCCCCGGCGCGGG
TAAATCCACGCTGCTGCTGCAGGTGATGTGCCGGTTGTCGGAAGGGATGAAAACCCTGTACGTCACCGGCGAAGAGTCCC
TGCAACAGGTGGCGATGCGCGCTCATCGTCTGGGATTGCCCACCGAAAATGTGAACATGCTGTCGGAAACCAGCATTGAG
CAGATCTGCCTGATCGCCGAGCAGGAGCAGCCGCAGCTGATGGTGATCGACTCGATCCAGGTGATGCACATGGCGGAGAT
CCAGTCCTCGCCGGGCAGCGTCGCCCAGGTGCGGGAAACCGCCGCCTACCTGACACGCTTCGCCAAAACGCGCGGCGTGG
CGATCATCATGGTGGGACACGTCACGAAAGATGGCTCGCTGGCCGGTCCGAAAGTGCTGGAGCACTGCATCGACTGTTCG
GTGCTGCTGGATGGCGATGCCGACTCCCGCTTCCGCACCCTGCGCAGTCATAAAAACCGCTTCGGTGCGGTCAATGAGCT
GGGGGTGTTTGCCATGACCGAACAGGGCATGCGCGAAGTCAGCAACCCGTCAGCGATCTTCCTGTCGCGCGGGGAAGAGA
TAACCTCAGGCAGCTCGGTTATGGTGCTCTGGGAGGGAACGCGGCCGCTGCTGGTGGAGATTCAGGCGCTGGTCGATCAC
TCAATGATGGGCAACCCGCGTCGCGTCGCGGTCGGGCTGGAGCAGAACCGCCTGGCCATACTGCTGGCGGTGCTGCACCG
TCACGGCGGATTGCAGATGGCGGATCAGGATGTGTTCGTCAACGTCGTGGGCGGCGTCAAAGTCACCGAAACCAGCGCCG
ATCTGGCGCTGATGCTGTCGATGGTGTCGAGCCTGCGCGATCGTCCGCTGCCGCAGGATCTGGTGATCTTCGGCGAAGTG
GGGCTGGCCGGTGAAATCCGCCCGGTGCCCAGCGGTCAGGAGCGCATCTCGGAAGCGGCGAAGCACGGCTTCAAACGTGC
CATCGTTCCGGCAGGAAATGCGCCGAAAAAACCGATTGCCGGGATGCAGGTTTTCAGCGCGAAAAAGCTGGCCGATGCGC
TGGCGATTCTGGACGATCTGTAA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-433)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(9-36)

AAA domain (AAA_25)

(87-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A5M7PRE4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

48.373

100

0.485
  radA Streptococcus mitis NCTC 12261

44.82

96.522

0.433
  radA Streptococcus pneumoniae Rx1

45.244

93.696

0.424
  radA Streptococcus pneumoniae D39

45.244

93.696

0.424
  radA Streptococcus pneumoniae R6

45.244

93.696

0.424
  radA Streptococcus pneumoniae TIGR4

45.244

93.696

0.424
  radA Streptococcus mitis SK321

45.244

93.696

0.424