Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QJP84_RS24120 Genome accession   NZ_CP124351
Coordinates   4917348..4917977 (+) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain AVS0362     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 4912348..4922977
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP84_RS24100 (QJP84_24100) ycbZ 4912738..4914498 (-) 1761 WP_000156502.1 Lon protease family protein -
  QJP84_RS24105 (QJP84_24105) matP 4914684..4915136 (+) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QJP84_RS24110 (QJP84_24110) ompA 4915212..4916264 (-) 1053 WP_001346420.1 porin OmpA -
  QJP84_RS24115 (QJP84_24115) sulA 4916620..4917129 (-) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QJP84_RS24120 (QJP84_24120) sxy/tfoX 4917348..4917977 (+) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QJP84_RS24125 (QJP84_24125) yccS 4917940..4920102 (-) 2163 WP_000875041.1 YccS family putative transporter -
  QJP84_RS24130 (QJP84_24130) yccF 4920112..4920558 (-) 447 WP_001261235.1 YccF domain-containing protein -
  QJP84_RS24135 (QJP84_24135) helD 4920681..4922735 (+) 2055 WP_001295938.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=755000 QJP84_RS24120 WP_000839151.1 4917348..4917977(+) (sxy/tfoX) [Escherichia coli strain AVS0362]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=755000 QJP84_RS24120 WP_000839151.1 4917348..4917977(+) (sxy/tfoX) [Escherichia coli strain AVS0362]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995