Detailed information    

insolico Bioinformatically predicted

Overview

Name   hns   Type   Regulator
Locus tag   OMP06_RS01605 Genome accession   NZ_CP110462
Coordinates   339723..340049 (+) Length   108 a.a.
NCBI ID   WP_000801427.1    Uniprot ID   N9J3X5
Organism   Acinetobacter baumannii strain RBH2     
Function   repress the expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 334723..345049
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OMP06_RS01580 (OMP06_01580) hemC 335340..336257 (+) 918 WP_002159654.1 hydroxymethylbilane synthase -
  OMP06_RS01585 (OMP06_01585) - 336262..337029 (+) 768 WP_000897418.1 uroporphyrinogen-III synthase -
  OMP06_RS01590 (OMP06_01590) - 337038..337877 (+) 840 WP_001230207.1 hypothetical protein -
  OMP06_RS01595 (OMP06_01595) - 337887..339080 (+) 1194 WP_000681771.1 hypothetical protein -
  OMP06_RS01600 (OMP06_01600) - 339088..339528 (+) 441 WP_000661569.1 thioesterase family protein -
  OMP06_RS01605 (OMP06_01605) hns 339723..340049 (+) 327 WP_000801427.1 H-NS family nucleoid-associated regulatory protein Regulator
  OMP06_RS01610 (OMP06_01610) gspN 340382..341125 (+) 744 WP_000730343.1 type II secretion system protein N -
  OMP06_RS01615 (OMP06_01615) - 341125..341961 (+) 837 WP_065087186.1 type II secretion system protein N -
  OMP06_RS01620 (OMP06_01620) gspD 342003..344279 (+) 2277 WP_024432837.1 type II secretion system secretin GspD -
  OMP06_RS01625 (OMP06_01625) - 344320..344949 (+) 630 WP_000219975.1 FHA domain-containing protein -

Sequence

Protein


Download         Length: 108 a.a.        Molecular weight: 12462.12 Da        Isoelectric Point: 5.0524

>NTDB_id=754985 OMP06_RS01605 WP_000801427.1 339723..340049(+) (hns) [Acinetobacter baumannii strain RBH2]
MKPDISELSVEELKRLQEEAEALIASKKDQAIEDAYNQIIEIAENVGFSVEQLLEFGAQKRKKTTRKSVEPRYRNKNNAE
ETWTGRGKQPRWLVAEIEKGAKLEDFLI

Nucleotide


Download         Length: 327 bp        

>NTDB_id=754985 OMP06_RS01605 WP_000801427.1 339723..340049(+) (hns) [Acinetobacter baumannii strain RBH2]
ATGAAACCGGATATTAGTGAATTATCTGTTGAAGAGTTAAAACGCTTACAAGAAGAAGCAGAAGCTTTAATTGCAAGCAA
AAAGGATCAAGCAATCGAAGATGCTTATAATCAAATTATCGAGATTGCTGAAAATGTAGGTTTTAGTGTTGAACAACTTC
TAGAATTTGGCGCTCAAAAACGTAAGAAAACAACACGTAAATCTGTAGAACCACGTTACCGTAACAAAAACAATGCTGAA
GAGACTTGGACGGGTCGCGGTAAACAACCACGTTGGTTAGTTGCTGAAATTGAAAAAGGTGCAAAACTTGAAGATTTCTT
AATCTAA

Domains

Predicted by InterproScan.

H-NS histone family (Histone_HNS)

(12-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB N9J3X5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hns Acinetobacter baumannii strain A118

100

100

1