Detailed information NTG0754910

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: ONS87_RS15730
• Genome accession: NZ_CP110416
• Coordinates: 3282837..3283895 (-)
• Length: 352 a.a.
• NCBI ID: WP_104357824.1
• Uniprot ID: A0A2S5T3H3
• Organism: Caldimonas thermodepolymerans strain DSM 15264
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 3277837..3288895

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
ONS87_RS15710 (ONS87_15710)	-	3279421..3279654 (-)	234	WP_104357891.1	PP0621 family protein	-
ONS87_RS15715 (ONS87_15715)	-	3279674..3280456 (-)	783	WP_232529312.1	cytochrome C assembly family protein	-
ONS87_RS15720 (ONS87_15720)	ffh	3280574..3281938 (+)	1365	WP_132764046.1	signal recognition particle protein	-
ONS87_RS15725 (ONS87_15725)	-	3282068..3282784 (+)	717	WP_104357825.1	DUF2726 domain-containing protein	-
ONS87_RS15730 (ONS87_15730)	pilA	3282837..3283895 (-)	1059	WP_104357824.1	signal recognition particle-docking protein FtsY	Machinery gene
ONS87_RS15735 (ONS87_15735)	rsmD	3283983..3284570 (+)	588	WP_104357823.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
ONS87_RS15740 (ONS87_15740)	coaD	3284602..3285105 (+)	504	WP_104357822.1	pantetheine-phosphate adenylyltransferase	-
ONS87_RS15745 (ONS87_15745)	-	3285117..3285383 (+)	267	WP_104357821.1	YfhL family 4Fe-4S dicluster ferredoxin	-
ONS87_RS15750 (ONS87_15750)	-	3285406..3285813 (-)	408	WP_104357820.1	hypothetical protein	-
ONS87_RS15755 (ONS87_15755)	pth	3285810..3286436 (-)	627	WP_104357819.1	aminoacyl-tRNA hydrolase	-
ONS87_RS15760 (ONS87_15760)	-	3286541..3287731 (-)	1191	WP_104357818.1	CynX/NimT family MFS transporter	-
ONS87_RS15765 (ONS87_15765)	-	3287862..3288494 (-)	633	WP_104357817.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 352 a.a.
• Molecular weight: 37141.80 Da
• Isoelectric Point: 6.8856

>NTDB_id=754910 ONS87_RS15730 WP_104357824.1 3282837..3283895(-) (pilA) [Caldimonas thermodepolymerans strain DSM 15264]
MFSFFKKKSPPPASAPAPAPAPVEAPAAPAPQAPVEPAAPAPAVAAAPAEPAPERRSWLDKLKQGLRRTGSSITQVFVGA
RIDDALYEELEAALLMADAGVKATEHLLADLKRRVKESKATDAAAVKALLVDAVTDLLKPLEKPLVVGRYTPTVMMVVGV
NGAGKTTSIGKLTRHLAESNQKVLLAAADTFRAAAREQLAVWADRNQVEIVSQEGGDPAAVTYDAVTAGRARGCDVVIAD
TAGRLPTQLHLMEELKKIRRVIAKADETAPHEVLLVVDGNTGQNALAQVKAFDDALQLTGLIVTKLDGTAKGGVLAAIAR
ERPVPVYFIGVGEKLEDLQTFNAREFAQALLD

Nucleotide

• Length: 1059 bp

>NTDB_id=754910 ONS87_RS15730 WP_104357824.1 3282837..3283895(-) (pilA) [Caldimonas thermodepolymerans strain DSM 15264]
ATGTTCAGTTTCTTCAAGAAAAAATCCCCCCCGCCGGCCTCCGCGCCTGCCCCTGCACCTGCCCCTGTCGAAGCGCCGGC
CGCCCCCGCGCCCCAGGCGCCGGTCGAGCCCGCGGCGCCGGCTCCCGCGGTAGCGGCGGCGCCGGCCGAGCCCGCGCCCG
AGCGCCGCTCGTGGCTGGACAAGCTCAAGCAGGGCCTGCGCCGCACCGGCTCGAGCATCACCCAGGTGTTCGTCGGCGCG
CGCATCGACGACGCGCTGTACGAGGAGCTCGAGGCCGCGCTGCTGATGGCCGACGCCGGCGTGAAGGCGACCGAGCACCT
GCTTGCCGACCTCAAGCGCCGGGTCAAGGAAAGCAAGGCCACCGACGCGGCGGCCGTCAAGGCGCTGCTGGTCGATGCAG
TGACCGACCTGCTCAAGCCGCTCGAGAAGCCGCTGGTCGTGGGCCGGTACACGCCGACCGTGATGATGGTCGTGGGCGTC
AACGGCGCGGGCAAGACCACCAGCATCGGCAAGCTCACGCGCCACCTGGCCGAATCGAACCAGAAGGTGCTGCTGGCTGC
GGCCGACACCTTCCGTGCCGCGGCGCGCGAGCAGCTCGCGGTGTGGGCCGACCGCAACCAGGTCGAGATCGTCAGCCAGG
AAGGCGGCGACCCGGCCGCGGTGACCTATGACGCGGTGACGGCCGGCCGTGCGCGCGGCTGCGACGTCGTGATCGCCGAC
ACCGCCGGGCGGCTGCCGACGCAGCTGCACCTGATGGAGGAGCTGAAGAAGATCCGCCGCGTGATCGCCAAGGCCGACGA
GACCGCACCGCACGAGGTGCTGCTGGTGGTCGACGGCAACACCGGCCAGAACGCGCTGGCCCAGGTCAAGGCCTTCGACG
ACGCGCTGCAGCTGACCGGCCTGATCGTCACCAAGCTGGACGGCACCGCCAAGGGCGGCGTGCTCGCGGCGATCGCGCGC
GAGCGCCCGGTGCCGGTGTACTTCATCGGCGTGGGCGAGAAGCTCGAGGACCTGCAGACCTTCAACGCGCGCGAGTTCGC
GCAGGCGCTGCTGGACTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (152-351)

• SRP54-type protein, helical bundle domain (SRP54_N) (70-133)

3D structure

• AlphaFold DB: A0A2S5T3H3

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	56.369	89.205	0.503