Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ONZ46_RS01180 Genome accession   NZ_CP110415
Coordinates   230348..231874 (+) Length   508 a.a.
NCBI ID   WP_104357487.1    Uniprot ID   A0A2S5T596
Organism   Caldimonas thermodepolymerans strain LMG 21645     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 225348..236874
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONZ46_RS01155 (ONZ46_01155) argS 225749..227434 (+) 1686 WP_265136413.1 arginine--tRNA ligase -
  ONZ46_RS01160 (ONZ46_01160) - 227502..228110 (+) 609 WP_104357420.1 SPOR domain-containing protein -
  ONZ46_RS01165 (ONZ46_01165) - 228178..228816 (+) 639 WP_104357421.1 thiol:disulfide interchange protein DsbA/DsbL -
  ONZ46_RS01170 (ONZ46_01170) lptA 228931..229554 (+) 624 WP_265136414.1 lipopolysaccharide transport periplasmic protein LptA -
  ONZ46_RS01175 (ONZ46_01175) lptB 229551..230318 (+) 768 WP_104357423.1 LPS export ABC transporter ATP-binding protein -
  ONZ46_RS01180 (ONZ46_01180) rpoN/rpoN1 230348..231874 (+) 1527 WP_104357487.1 RNA polymerase factor sigma-54 Machinery gene
  ONZ46_RS01185 (ONZ46_01185) - 232035..233258 (+) 1224 WP_265136416.1 THUMP domain-containing class I SAM-dependent RNA methyltransferase -
  ONZ46_RS01190 (ONZ46_01190) - 233263..234012 (-) 750 WP_104357425.1 5'-methylthioadenosine/adenosylhomocysteine nucleosidase -
  ONZ46_RS01195 (ONZ46_01195) - 234096..235763 (-) 1668 WP_104357426.1 long-chain-fatty-acid--CoA ligase -
  ONZ46_RS01200 (ONZ46_01200) - 236176..236349 (+) 174 WP_165908724.1 hypothetical protein -

Sequence

Protein


Download         Length: 508 a.a.        Molecular weight: 56543.05 Da        Isoelectric Point: 4.5833

>NTDB_id=754879 ONZ46_RS01180 WP_104357487.1 230348..231874(+) (rpoN/rpoN1) [Caldimonas thermodepolymerans strain LMG 21645]
MKPSLQVRLSQHLALTPQLQQSIRLLQLSTLELHQEVEQMLEQNPFLEPDEDYAAEPALAAPERPLTREERAAADAEQAG
ADSFDAAEAAPTLDTVELGATERDDWENGTERDDFDGIRETPSTRNGAVDDDDLDPIDRASPGITLQDHLRQQLLGMRLA
PEDAAAVMVLIESLDEDGYLADPLEEIAERLLDGNDDPEAREDLLERLRCALKWLQNMEPTGVGARSLSECLCLQLRAME
RSEAQIIALMICKDHLEALARRDVKKLMAATGADEELLRQAQALIVSLEPKPGRPFTRAEANVIVPDVIVQKSGRGWKVV
LNPDVMPKLRINDLYAQALKQQRSSDSGQALSARLQEARWFMKNIQQRFETIQRVSQAIVERQKNFFSHGEIAMKPLVLR
EIADELGLHESTISRVTTAKYMATPFGTFELKYFFGSSLNTDAGGNASSTAVRALIKQLVSAEDPKKPLSDSQISQLLEE
QGIQVARRTVAKYREALKIAPANLRKSI

Nucleotide


Download         Length: 1527 bp        

>NTDB_id=754879 ONZ46_RS01180 WP_104357487.1 230348..231874(+) (rpoN/rpoN1) [Caldimonas thermodepolymerans strain LMG 21645]
ATGAAACCCTCCCTGCAGGTCCGTCTTTCGCAGCATCTGGCGCTGACGCCGCAGCTGCAGCAGTCGATCCGGCTGCTGCA
GCTGTCCACGCTCGAACTCCACCAGGAGGTCGAGCAGATGCTCGAACAGAACCCGTTCCTCGAACCCGACGAGGACTACG
CCGCCGAACCCGCGCTGGCCGCGCCCGAGCGTCCGCTGACGCGCGAGGAGCGCGCCGCGGCCGATGCCGAACAGGCCGGC
GCCGACAGCTTCGATGCGGCCGAGGCCGCGCCCACGCTGGACACGGTCGAGCTGGGCGCCACCGAGCGCGACGACTGGGA
GAACGGCACCGAACGCGACGACTTCGACGGCATCCGCGAGACGCCCAGCACGCGCAACGGGGCGGTCGACGACGACGACC
TCGACCCGATCGACCGCGCCTCGCCCGGCATCACGCTGCAGGACCACCTGCGCCAGCAGCTGCTCGGCATGCGCCTGGCG
CCCGAGGACGCCGCGGCGGTGATGGTGCTGATCGAGTCCCTCGACGAGGACGGCTACCTCGCCGACCCGCTGGAGGAGAT
CGCCGAGCGCCTGCTGGACGGCAACGACGACCCGGAGGCGCGCGAGGACCTGCTCGAGCGCCTGCGCTGCGCGCTCAAGT
GGCTGCAGAACATGGAGCCCACCGGCGTGGGCGCGCGCAGCCTGTCCGAGTGCCTGTGCCTGCAGCTGCGCGCGATGGAG
CGCAGCGAGGCGCAGATCATCGCGCTGATGATCTGCAAGGACCACCTCGAGGCGCTGGCGCGGCGCGACGTCAAGAAGCT
GATGGCCGCCACCGGCGCCGACGAGGAGCTGCTGCGCCAGGCGCAGGCGCTGATCGTCTCGCTGGAACCCAAGCCGGGCC
GGCCGTTCACGCGCGCCGAGGCCAACGTGATCGTGCCGGACGTGATCGTGCAGAAGTCCGGGCGCGGCTGGAAGGTGGTG
CTCAACCCGGACGTGATGCCCAAGCTGCGCATCAACGACCTGTACGCGCAGGCGCTCAAGCAGCAGCGCAGCAGCGACAG
CGGCCAGGCCCTGAGCGCGCGGCTGCAGGAGGCGCGCTGGTTCATGAAGAACATCCAGCAGCGCTTCGAGACCATCCAGC
GCGTCTCGCAGGCCATCGTCGAGCGGCAGAAGAACTTCTTCAGCCACGGCGAGATCGCGATGAAGCCGCTGGTGCTGCGC
GAGATCGCCGACGAGCTGGGCCTGCACGAATCGACCATCTCGCGCGTGACCACCGCCAAGTACATGGCCACGCCGTTCGG
CACCTTCGAGCTGAAGTACTTCTTCGGCTCGTCGCTCAACACCGACGCGGGCGGCAACGCGTCGAGCACCGCGGTGCGCG
CGCTGATCAAGCAGCTGGTCAGCGCCGAGGACCCGAAGAAGCCGCTGTCGGACAGCCAGATCAGCCAGCTGCTCGAGGAG
CAGGGCATCCAGGTGGCGCGCCGCACGGTGGCCAAGTACCGCGAGGCCCTGAAGATCGCGCCGGCCAATCTCCGCAAGAG
CATCTGA

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(143-335)

Sigma-54, DNA binding domain (Sigma54_DBD)

(351-506)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(4-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A2S5T596

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

54.826

100

0.559