Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   LFL96_RS11725 Genome accession   NZ_CP110395
Coordinates   2743699..2745075 (-) Length   458 a.a.
NCBI ID   WP_280995412.1    Uniprot ID   -
Organism   Paraburkholderia sp. D15     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2738699..2750075
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL96_RS11705 (LFL96_11705) - 2739246..2739725 (-) 480 WP_280995409.1 glutathione peroxidase -
  LFL96_RS11710 (LFL96_11710) - 2739862..2741874 (+) 2013 WP_280995410.1 ATP-binding cassette domain-containing protein -
  LFL96_RS11715 (LFL96_11715) - 2741993..2743084 (+) 1092 WP_281000711.1 CaiB/BaiF CoA-transferase family protein -
  LFL96_RS11720 (LFL96_11720) - 2743233..2743511 (-) 279 WP_280995411.1 DUF2866 domain-containing protein -
  LFL96_RS11725 (LFL96_11725) radA 2743699..2745075 (-) 1377 WP_280995412.1 DNA repair protein RadA Machinery gene
  LFL96_RS11730 (LFL96_11730) alr 2745125..2746195 (-) 1071 WP_280995413.1 alanine racemase -
  LFL96_RS11735 (LFL96_11735) lplT 2746414..2747721 (+) 1308 WP_280995414.1 lysophospholipid transporter LplT -
  LFL96_RS11740 (LFL96_11740) thiD 2747805..2748611 (+) 807 WP_280995415.1 bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase -
  LFL96_RS11745 (LFL96_11745) - 2748655..2749632 (-) 978 WP_281000714.1 DUF1853 family protein -

Sequence

Protein


Download         Length: 458 a.a.        Molecular weight: 48608.96 Da        Isoelectric Point: 7.1651

>NTDB_id=754870 LFL96_RS11725 WP_280995412.1 2743699..2745075(-) (radA) [Paraburkholderia sp. D15]
MAKPKTLYICSECGGQSPKWAGQCPSCNAWNTLVESVAEAPSTHRFQSLAKSAPVRRLADIEASDVPRFSTGVSEFDRVL
GGGLVPGGVVLIGGDPGIGKSTLLLQSLAEIAADKRALYISGEESAAQIALRAQRLSLLEPGSKASELQLLAEIQLEKIQ
ATIADHQPDVAVIDSIQTVYSDALTSAPGSVAQVRECAAQLTRIAKQSGTTIIMVGHVTKEGALAGPRVLEHIVDTVLYF
EGDTHSSYRLVRAIKNRFGAVNELGVFAMTERGLRGVANPSALFLSQHEQSVPGSCVLVTQEGTRPLLVEVQALVDAANA
PNPRRLAVGLEQNRLAMLLAVLHRHAGIACFDQDVFLNAVGGVKITEPAADLAVLLAIHSSMRNKPLPKGLVVFGEVGLA
GEIRPSPRGQERLKEAAKLGFSVAVIPKANAPKQPIEGLQVVAVERIEQAIDRVRTLE

Nucleotide


Download         Length: 1377 bp        

>NTDB_id=754870 LFL96_RS11725 WP_280995412.1 2743699..2745075(-) (radA) [Paraburkholderia sp. D15]
GTGGCAAAACCCAAGACTCTGTATATCTGTAGCGAATGCGGCGGACAGTCGCCGAAATGGGCCGGGCAGTGCCCGTCGTG
CAACGCGTGGAACACGCTGGTCGAGTCGGTGGCGGAAGCGCCGTCCACGCACCGCTTCCAGTCGCTGGCGAAGAGCGCGC
CGGTGCGCCGTCTCGCCGACATCGAGGCGTCCGACGTGCCGCGCTTCTCGACCGGCGTCAGCGAATTCGACCGCGTGCTC
GGCGGCGGTCTGGTGCCGGGTGGCGTGGTGCTGATCGGTGGCGATCCGGGTATCGGCAAATCGACGCTGCTGCTGCAGTC
GCTCGCCGAAATCGCCGCGGACAAACGGGCGCTCTATATCAGCGGGGAAGAATCGGCCGCGCAGATCGCGTTGCGCGCGC
AGCGTCTTTCGCTGCTGGAACCGGGCTCGAAGGCGAGCGAGCTGCAATTGCTCGCGGAAATCCAGCTCGAAAAAATTCAG
GCGACGATCGCCGATCATCAACCCGACGTCGCCGTGATCGACTCGATCCAGACCGTCTACTCCGACGCGCTGACTTCCGC
GCCGGGTTCGGTCGCGCAGGTGCGCGAGTGCGCCGCGCAACTCACGCGGATCGCCAAGCAATCGGGCACCACGATCATCA
TGGTCGGCCACGTGACCAAGGAAGGCGCGCTCGCGGGGCCGCGCGTGCTCGAACATATCGTCGATACGGTGCTGTACTTC
GAGGGCGACACGCATTCGTCGTACCGTCTGGTGCGCGCGATAAAGAACCGCTTCGGCGCGGTCAACGAACTCGGCGTGTT
CGCGATGACCGAGCGCGGCTTGCGCGGCGTGGCCAATCCGTCGGCGCTGTTCCTGTCGCAGCACGAGCAGTCGGTGCCGG
GTTCGTGCGTGCTGGTCACGCAGGAGGGCACGCGCCCGCTGCTGGTCGAAGTGCAGGCGCTGGTGGATGCGGCCAATGCG
CCGAATCCGCGGCGTCTCGCGGTCGGTCTCGAACAGAACCGGCTCGCGATGCTGCTGGCGGTGCTGCATCGTCACGCGGG
CATCGCCTGCTTCGATCAGGACGTGTTTCTCAACGCGGTGGGCGGCGTGAAGATCACCGAACCCGCCGCCGACCTCGCCG
TGCTGCTCGCGATTCATTCGTCGATGCGTAACAAACCGTTGCCCAAGGGTCTCGTCGTGTTCGGCGAAGTGGGGCTCGCC
GGCGAAATCCGGCCGTCGCCGCGTGGCCAGGAGCGTCTGAAGGAAGCGGCCAAGCTCGGCTTCTCGGTCGCGGTGATTCC
GAAGGCCAACGCGCCGAAGCAGCCGATCGAAGGCTTACAGGTCGTTGCGGTCGAACGGATCGAACAGGCGATCGACCGGG
TCCGCACGCTCGAATAG

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

AAA domain (AAA_25)

(78-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.675

100

0.5
  radA Streptococcus mitis SK321

48.035

100

0.48
  radA Streptococcus pneumoniae Rx1

47.722

100

0.48
  radA Streptococcus pneumoniae D39

47.722

100

0.48
  radA Streptococcus pneumoniae R6

47.722

100

0.48
  radA Streptococcus pneumoniae TIGR4

47.722

100

0.48
  radA Streptococcus mitis NCTC 12261

47.702

99.782

0.476