Detailed information NTG0754863

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: LFL96_RS02020
• Genome accession: NZ_CP110395
• Coordinates: 462952..464127 (-)
• Length: 391 a.a.
• NCBI ID: WP_280997483.1
• Uniprot ID: -
• Organism: Paraburkholderia sp. D15
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 457952..469127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
LFL96_RS02000 (LFL96_02000)	ybiB	458796..459767 (-)	972	WP_280997478.1	DNA-binding protein YbiB	-
LFL96_RS02005 (LFL96_02005)	-	460063..460761 (+)	699	WP_280997479.1	fumarylacetoacetate hydrolase family protein	-
LFL96_RS02010 (LFL96_02010)	maiA	460790..461434 (+)	645	WP_281000872.1	maleylacetoacetate isomerase	-
LFL96_RS02015 (LFL96_02015)	-	461487..462671 (-)	1185	WP_280997481.1	acyltransferase	-
LFL96_RS02020 (LFL96_02020)	pilA	462952..464127 (-)	1176	WP_280997483.1	signal recognition particle-docking protein FtsY	Machinery gene
LFL96_RS02025 (LFL96_02025)	rsmD	464369..464983 (+)	615	WP_280997485.1	16S rRNA (guanine(966)-N(2))-methyltransferase RsmD	-
LFL96_RS02030 (LFL96_02030)	coaD	465096..465611 (+)	516	WP_280997487.1	pantetheine-phosphate adenylyltransferase	-
LFL96_RS02035 (LFL96_02035)	-	465675..465932 (+)	258	WP_280997489.1	YfhL family 4Fe-4S dicluster ferredoxin	-
LFL96_RS02040 (LFL96_02040)	hisC	466052..467131 (-)	1080	WP_280997492.1	histidinol-phosphate transaminase	-
LFL96_RS02045 (LFL96_02045)	pth	467229..467831 (-)	603	WP_280997494.1	aminoacyl-tRNA hydrolase	-
LFL96_RS02050 (LFL96_02050)	-	467985..468599 (-)	615	WP_280997496.1	50S ribosomal protein L25/general stress protein Ctc	-

Sequence

Protein

• Length: 391 a.a.
• Molecular weight: 41427.24 Da
• Isoelectric Point: 4.6635

>NTDB_id=754863 LFL96_RS02020 WP_280997483.1 462952..464127(-) (pilA) [Paraburkholderia sp. D15]
MFSFFKRFKGSKESDNAPEESQSAPADEAPEAAAEAPVAPVASPARATPASAPAPSPVFEPEQQEPAIDIDESADSAETV
EIVPPPAQDAGAKRSWLTRLKTGLSKTSSSLTGIFVGTKIDEDLYEELETALLMSDAGVGATEFLLESLREKVRAERLTD
PQQVKTALRTLLIDLLKPLEKSLMLGRAQPLVMMIAGVNGAGKTTSIGKLAKHLQSFDQSVLLAAGDTFRAAAREQLAIW
GQRNNVTVVSQESGDPAAVIFDAVGAARARKIDVMMADTAGRLPTQLHLMEELRKVKRVIGKAQDGAPHEVLLVIDANTG
QNALAQVKAFDDALGLTGLIVTKLDGTAKGGILAAIARQRPIPVYFIGVGEKVEDLQPFSAEEFADALLGG

Nucleotide

• Length: 1176 bp

>NTDB_id=754863 LFL96_RS02020 WP_280997483.1 462952..464127(-) (pilA) [Paraburkholderia sp. D15]
ATGTTCAGCTTTTTCAAACGATTCAAGGGTTCGAAAGAGTCCGATAACGCGCCAGAAGAGTCGCAATCCGCGCCGGCAGA
CGAGGCGCCAGAAGCTGCCGCCGAGGCGCCCGTCGCGCCGGTGGCATCGCCCGCTCGCGCCACGCCCGCTTCCGCACCGG
CGCCCTCTCCCGTGTTCGAACCCGAGCAGCAGGAGCCGGCGATAGACATCGACGAAAGCGCGGACAGCGCCGAAACCGTC
GAAATCGTCCCGCCACCGGCGCAGGACGCCGGCGCCAAGCGTTCGTGGCTCACGCGCCTGAAAACCGGTCTGTCGAAAAC
CAGTTCGAGCCTGACCGGCATCTTCGTCGGCACGAAGATCGACGAGGATCTGTACGAAGAACTCGAAACCGCGTTGCTGA
TGTCGGACGCGGGCGTCGGCGCCACCGAATTCCTGCTCGAATCGCTGCGTGAAAAAGTGCGCGCCGAGCGCCTTACCGAT
CCGCAGCAGGTGAAAACCGCACTGCGCACATTGTTGATCGACCTGCTCAAGCCGCTCGAAAAATCGCTGATGCTTGGCCG
CGCACAGCCGCTCGTCATGATGATCGCCGGCGTGAACGGCGCGGGAAAGACGACGAGCATAGGCAAGCTCGCCAAGCATC
TGCAAAGTTTCGATCAATCGGTGCTGCTGGCCGCAGGCGACACGTTCCGCGCCGCCGCGCGCGAGCAACTGGCAATCTGG
GGACAGCGCAACAACGTCACAGTGGTGTCGCAGGAAAGCGGTGACCCGGCGGCGGTGATCTTCGACGCGGTCGGCGCCGC
CCGCGCGCGCAAGATCGACGTGATGATGGCGGACACCGCCGGCCGTCTGCCGACCCAGCTGCATCTGATGGAAGAGTTGC
GCAAGGTCAAGCGCGTGATCGGCAAGGCACAGGACGGCGCGCCGCACGAAGTGCTGCTGGTGATCGACGCCAACACCGGC
CAGAACGCACTCGCCCAGGTCAAGGCTTTCGACGATGCACTCGGCCTCACGGGTCTGATCGTCACCAAGCTCGACGGCAC
GGCGAAGGGCGGCATTCTCGCCGCAATCGCGCGGCAGCGGCCGATTCCGGTGTACTTCATCGGCGTCGGCGAGAAGGTCG
AGGACTTGCAGCCGTTTAGCGCGGAAGAATTCGCGGACGCGTTGCTGGGCGGTTGA

Domains

Predicted by InterproScan.

• SRP54-type protein, helical bundle domain (SRP54_N) (109-169)

• SRP54-type protein, GTPase domain (SRP54) (191-390)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	53.791	100	0.581