Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OGV25_RS06465 Genome accession   NZ_CP110390
Coordinates   1368633..1369268 (+) Length   211 a.a.
NCBI ID   WP_033700585.1    Uniprot ID   -
Organism   Pseudomonas sp. P1B16     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1363633..1374268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OGV25_RS06445 (OGV25_06450) - 1363948..1364880 (+) 933 WP_186653745.1 ABC transporter ATP-binding protein -
  OGV25_RS06450 (OGV25_06455) - 1364877..1365656 (+) 780 WP_033700586.1 ABC transporter permease -
  OGV25_RS06455 (OGV25_06460) - 1365669..1366166 (-) 498 Protein_1264 DUF2062 domain-containing protein -
  OGV25_RS06460 (OGV25_06465) - 1366309..1368519 (+) 2211 Protein_1265 DNA internalization-related competence protein ComEC/Rec2 -
  OGV25_RS06465 (OGV25_06470) exbB 1368633..1369268 (+) 636 WP_033700585.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OGV25_RS06470 (OGV25_06475) - 1369265..1369699 (+) 435 WP_033700584.1 ExbD/TolR family protein -
  OGV25_RS06475 (OGV25_06480) lpxK 1369699..1370709 (+) 1011 WP_320327355.1 tetraacyldisaccharide 4'-kinase -
  OGV25_RS06480 (OGV25_06485) - 1370753..1370938 (+) 186 WP_003247142.1 Trm112 family protein -
  OGV25_RS06485 (OGV25_06490) kdsB 1370935..1371699 (+) 765 WP_047583572.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OGV25_RS06490 (OGV25_06495) - 1371699..1372163 (+) 465 WP_047583571.1 low molecular weight protein-tyrosine-phosphatase -
  OGV25_RS06495 (OGV25_06500) murB 1372160..1373180 (+) 1021 Protein_1272 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22873.20 Da        Isoelectric Point: 7.3614

>NTDB_id=754847 OGV25_RS06465 WP_033700585.1 1368633..1369268(+) (exbB) [Pseudomonas sp. P1B16]
MWELVKSGGWMMLPIILSSIVAMAIVVERLWTLRASRVTPPHLLGQVWMWIKDKQLTSDKLKALRADSPLGEILAAGLAN
SRHGREIMKECIEEAASRVIHDLERYISTLGTIAAMAPLLGLLGTVLGMIDIFSAFMGSQMTANAAVLAGGISKALVTTA
AGLMIGIPAVFFHRFLLRRIDELVVGMEQEAIKLVEVIQGDREVEVAGGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=754847 OGV25_RS06465 WP_033700585.1 1368633..1369268(+) (exbB) [Pseudomonas sp. P1B16]
GTGTGGGAATTGGTCAAGTCCGGTGGTTGGATGATGCTGCCGATCATTCTGAGTTCCATCGTTGCCATGGCTATCGTCGT
CGAGCGCCTGTGGACCCTGCGCGCCAGCCGCGTGACCCCGCCACACCTGCTGGGCCAGGTCTGGATGTGGATCAAGGACA
AGCAACTCACCAGTGACAAGCTCAAGGCCCTGCGCGCCGATTCGCCGTTGGGCGAAATCCTCGCTGCGGGCCTGGCCAAC
TCACGCCATGGTCGCGAGATCATGAAAGAGTGCATCGAGGAGGCCGCGTCGCGCGTCATCCACGACCTTGAGCGTTACAT
CAGCACCCTCGGCACCATTGCCGCGATGGCCCCGCTGCTGGGCTTGCTGGGCACCGTATTGGGCATGATCGACATCTTCA
GCGCCTTCATGGGCTCGCAGATGACTGCCAATGCCGCTGTCCTGGCCGGCGGTATCTCCAAGGCACTGGTCACCACCGCA
GCGGGCTTGATGATCGGTATCCCGGCGGTGTTCTTCCACCGCTTCCTGCTGCGCCGCATCGATGAGCTGGTAGTCGGCAT
GGAGCAAGAGGCGATCAAGCTGGTGGAAGTGATCCAGGGCGACCGCGAAGTCGAAGTGGCCGGAGGCAAGGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

82.464

100

0.825