Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HRR21_RS05525 Genome accession   NZ_AP021892
Coordinates   1115944..1116573 (-) Length   209 a.a.
NCBI ID   WP_052909792.1    Uniprot ID   -
Organism   Escherichia coli strain 2018-01-1CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1110944..1121573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR21_RS05510 (VEGS02_10690) helD 1111186..1113240 (-) 2055 WP_001295354.1 DNA helicase IV -
  HRR21_RS05515 (VEGS02_10700) yccF 1113363..1113809 (+) 447 WP_001261235.1 YccF domain-containing protein -
  HRR21_RS05520 (VEGS02_10710) yccS 1113819..1115981 (+) 2163 WP_000875061.1 YccS family putative transporter -
  HRR21_RS05525 (VEGS02_10720) sxy/tfoX 1115944..1116573 (-) 630 WP_052909792.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HRR21_RS05530 (VEGS02_10730) sulA 1116792..1117301 (+) 510 WP_001554869.1 SOS-induced cell division inhibitor SulA -
  HRR21_RS05535 (VEGS02_10750) ompA 1117658..1118698 (+) 1041 WP_000750416.1 porin OmpA -
  HRR21_RS05540 (VEGS02_10760) matP 1118774..1119226 (-) 453 WP_000877161.1 macrodomain Ter protein MatP -
  HRR21_RS05545 (VEGS02_10770) ycbZ 1119412..1121172 (+) 1761 WP_000156518.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24159.07 Da        Isoelectric Point: 9.2180

>NTDB_id=75472 HRR21_RS05525 WP_052909792.1 1115944..1116573(-) (sxy/tfoX) [Escherichia coli strain 2018-01-1CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVILN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=75472 HRR21_RS05525 WP_052909792.1 1115944..1116573(-) (sxy/tfoX) [Escherichia coli strain 2018-01-1CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTATCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995

Multiple sequence alignment