Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   OM089_RS24245 Genome accession   NZ_CP110368
Coordinates   5224983..5225540 (+) Length   185 a.a.
NCBI ID   WP_003119423.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain 18083286     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5219983..5230540
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS24225 pilR 5221259..5222596 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  OM089_RS24230 thiO 5222642..5223736 (-) 1095 WP_034029886.1 glycine oxidase ThiO -
  OM089_RS24235 - 5223871..5224380 (+) 510 WP_003102595.1 Tfp pilus assembly protein FimT/FimU -
  OM089_RS24240 - 5224486..5224992 (+) 507 WP_003102598.1 Tfp pilus assembly protein FimT/FimU -
  OM089_RS24245 pilV 5224983..5225540 (+) 558 WP_003119423.1 type 4a pilus minor pilin PilV Machinery gene
  OM089_RS24250 pilW 5225537..5226361 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  OM089_RS24255 pilX 5226358..5226945 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  OM089_RS24260 pilY1 5226957..5230448 (+) 3492 WP_023089636.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20061.15 Da        Isoelectric Point: 8.2255

>NTDB_id=754684 OM089_RS24245 WP_003119423.1 5224983..5225540(+) (pilV) [Pseudomonas aeruginosa strain 18083286]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=754684 OM089_RS24245 WP_003119423.1 5224983..5225540(+) (pilV) [Pseudomonas aeruginosa strain 18083286]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

99.459

100

0.995