Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   OM089_RS10530 Genome accession   NZ_CP110368
Coordinates   2247715..2248350 (+) Length   211 a.a.
NCBI ID   WP_003091163.1    Uniprot ID   A0A0H2ZBU7
Organism   Pseudomonas aeruginosa strain 18083286     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2242715..2253350
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM089_RS10515 - 2243433..2244677 (+) 1245 WP_003105198.1 lipoprotein-releasing ABC transporter permease subunit -
  OM089_RS10520 - 2244753..2245286 (-) 534 WP_003091165.1 DUF2062 domain-containing protein -
  OM089_RS10525 comA 2245417..2247642 (+) 2226 WP_003162490.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  OM089_RS10530 exbB 2247715..2248350 (+) 636 WP_003091163.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  OM089_RS10535 - 2248347..2248787 (+) 441 WP_003091161.1 biopolymer transporter ExbD -
  OM089_RS10540 lpxK 2248787..2249785 (+) 999 WP_003130692.1 tetraacyldisaccharide 4'-kinase -
  OM089_RS10545 - 2249823..2250008 (+) 186 WP_003091157.1 Trm112 family protein -
  OM089_RS10550 kdsB 2250008..2250772 (+) 765 WP_003162491.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  OM089_RS10555 - 2250772..2251236 (+) 465 WP_003162492.1 low molecular weight protein-tyrosine-phosphatase -
  OM089_RS10560 murB 2251233..2252252 (+) 1020 WP_003091153.1 UDP-N-acetylmuramate dehydrogenase -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22890.06 Da        Isoelectric Point: 6.7278

>NTDB_id=754670 OM089_RS10530 WP_003091163.1 2247715..2248350(+) (exbB) [Pseudomonas aeruginosa strain 18083286]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQIKGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=754670 OM089_RS10530 WP_003091163.1 2247715..2248350(+) (exbB) [Pseudomonas aeruginosa strain 18083286]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAAGGGCA
AGCAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGCCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGCACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H2ZBU7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

81.043

100

0.81