Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   LFL98_RS16490 Genome accession   NZ_CP110365
Coordinates   3129772..3130416 (-) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3124772..3135416
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS16455 (LFL98_16460) mrpB 3125964..3126395 (+) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -
  LFL98_RS16460 (LFL98_16465) mrpC 3126395..3126736 (+) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  LFL98_RS16465 (LFL98_16470) mrpD 3126729..3128210 (+) 1482 WP_029725869.1 Na+/H+ antiporter subunit D -
  LFL98_RS16470 (LFL98_16475) mrpE 3128216..3128692 (+) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  LFL98_RS16475 (LFL98_16480) mrpF 3128692..3128976 (+) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  LFL98_RS16480 (LFL98_16485) mnhG 3128960..3129334 (+) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  LFL98_RS16485 (LFL98_16490) yuxO 3129373..3129753 (-) 381 WP_017695528.1 hotdog fold thioesterase -
  LFL98_RS16490 (LFL98_16495) comA 3129772..3130416 (-) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  LFL98_RS16495 (LFL98_16500) comP 3130497..3132809 (-) 2313 WP_047183111.1 histidine kinase Regulator
  LFL98_RS16500 (LFL98_16505) comX 3132825..3133046 (-) 222 WP_014114983.1 competence pheromone ComX -
  LFL98_RS16505 (LFL98_16510) - 3133043..3133912 (-) 870 WP_277736668.1 polyprenyl synthetase family protein -
  LFL98_RS16510 (LFL98_16515) degQ 3134097..3134237 (-) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  LFL98_RS16515 (LFL98_16520) - 3134460..3134522 (+) 63 Protein_3187 hypothetical protein -
  LFL98_RS16520 (LFL98_16525) - 3134699..3135067 (+) 369 WP_116315920.1 hypothetical protein -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=754645 LFL98_RS16490 WP_003220716.1 3129772..3130416(-) (comA) [Bacillus subtilis strain HY2-62]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=754645 LFL98_RS16490 WP_003220716.1 3129772..3130416(-) (comA) [Bacillus subtilis strain HY2-62]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCCCGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1