Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   LFL98_RS14155 Genome accession   NZ_CP110365
Coordinates   2698879..2699625 (-) Length   248 a.a.
NCBI ID   WP_072592551.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2693879..2704625
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS14130 (LFL98_14135) mreC 2694285..2695157 (-) 873 WP_009967915.1 rod shape-determining protein MreC -
  LFL98_RS14135 (LFL98_14140) mreB 2695188..2696201 (-) 1014 WP_003229650.1 cell shape-determining protein MreB -
  LFL98_RS14140 (LFL98_14145) radC 2696293..2696988 (-) 696 WP_003246034.1 DNA repair protein RadC -
  LFL98_RS14145 (LFL98_14150) maf 2697025..2697594 (-) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  LFL98_RS14150 (LFL98_14155) spoIIB 2697747..2698745 (-) 999 WP_277736570.1 stage II sporulation protein SpoIIB -
  LFL98_RS14155 (LFL98_14160) comC 2698879..2699625 (-) 747 WP_072592551.1 A24 family peptidase Machinery gene
  LFL98_RS14160 (LFL98_14165) folC 2699766..2701058 (-) 1293 WP_277736571.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  LFL98_RS14165 (LFL98_14170) valS 2701118..2703760 (-) 2643 WP_277737223.1 valine--tRNA ligase -
  LFL98_RS14170 (LFL98_14175) - 2704208..2704399 (+) 192 WP_003222590.1 hypothetical protein -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26422.99 Da        Isoelectric Point: 9.7944

>NTDB_id=754640 LFL98_RS14155 WP_072592551.1 2698879..2699625(-) (comC) [Bacillus subtilis strain HY2-62]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFVLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=754640 LFL98_RS14155 WP_072592551.1 2698879..2699625(-) (comC) [Bacillus subtilis strain HY2-62]
ATGCTATCCATTCTTTTTATCTTTGGGCTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTTTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCCGCCGCAGGAATACGCTTTGGCACGTCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGTATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCGCTTGATTCCTGGTATGCAGGCCTGTTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTGTGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCTGTTTTGATAGGTGCATTATATGGAGCAGCAGCCGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTTGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)

Type IV leader peptidase family (Peptidase_A24)

(101-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.597

100

0.996