Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   LFL98_RS12785 Genome accession   NZ_CP110365
Coordinates   2468205..2468972 (-) Length   255 a.a.
NCBI ID   WP_014477369.1    Uniprot ID   A0A0D1L7G7
Organism   Bacillus subtilis strain HY2-62     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2463205..2473972
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS12765 (LFL98_12770) ppsR 2463380..2464192 (-) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -
  LFL98_RS12770 (LFL98_12775) ccpN 2464218..2464856 (-) 639 WP_003237058.1 transcriptional regulator CcpN -
  LFL98_RS12775 (LFL98_12780) glyS 2464989..2467028 (-) 2040 WP_038429316.1 glycine--tRNA ligase subunit beta -
  LFL98_RS12780 (LFL98_12785) glyQ 2467021..2467908 (-) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  LFL98_RS12785 (LFL98_12790) recO 2468205..2468972 (-) 768 WP_014477369.1 DNA repair protein RecO Machinery gene
  LFL98_RS12790 (LFL98_12795) yqzL 2469009..2469152 (-) 144 WP_003230053.1 YqzL family protein -
  LFL98_RS12795 (LFL98_12800) era 2469300..2470205 (-) 906 WP_003230051.1 GTPase Era -
  LFL98_RS12800 (LFL98_12805) cdd 2470186..2470596 (-) 411 WP_003230049.1 cytidine deaminase -
  LFL98_RS12805 (LFL98_12810) unpK 2470715..2471086 (-) 372 WP_015384119.1 diacylglycerol kinase family protein -
  LFL98_RS12810 (LFL98_12815) ybeY 2471067..2471540 (-) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  LFL98_RS12815 (LFL98_12820) pgpH 2471541..2473676 (-) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29342.05 Da        Isoelectric Point: 8.3080

>NTDB_id=754632 LFL98_RS12785 WP_014477369.1 2468205..2468972(-) (recO) [Bacillus subtilis strain HY2-62]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYIAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=754632 LFL98_RS12785 WP_014477369.1 2468205..2468972(-) (recO) [Bacillus subtilis strain HY2-62]
ATGCTGACAAAATGTGAAGGAATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACTTTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATATTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAGTCATTAAAACAGCTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTAAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGACTCTTTTACTATTTTGATCTGTCGAGGCTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O N terminal (RecO_N)

(1-75)

Recombination protein O C terminal (RecO_C)

(82-237)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0D1L7G7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

99.608

100

0.996