Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   LFL98_RS11250 Genome accession   NZ_CP110365
Coordinates   2197422..2198042 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2192422..2203042
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS11210 (LFL98_11215) ypqE 2193550..2194056 (-) 507 WP_015483368.1 PTS glucose transporter subunit IIA -
  LFL98_RS11215 (LFL98_11220) ypqA 2194194..2194613 (+) 420 WP_015714150.1 Hsp20/alpha crystallin family protein -
  LFL98_RS11220 (LFL98_11225) yppG 2194634..2195011 (-) 378 WP_015251832.1 YppG family protein -
  LFL98_RS11225 (LFL98_11230) yppF 2195199..2195387 (+) 189 WP_003230690.1 YppF family protein -
  LFL98_RS11230 (LFL98_11235) yppE 2195429..2195800 (-) 372 WP_003246080.1 YppE family protein -
  LFL98_RS11235 (LFL98_11240) yppD 2195846..2196091 (-) 246 WP_004398488.1 YppD family protein -
  LFL98_RS11240 (LFL98_11245) sspM 2196290..2196394 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  LFL98_RS11245 (LFL98_11250) yppC 2196419..2197381 (-) 963 WP_080529462.1 DUF2515 domain-containing protein -
  LFL98_RS11250 (LFL98_11255) recU 2197422..2198042 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  LFL98_RS11255 (LFL98_11260) ponA 2198064..2200808 (+) 2745 WP_088467250.1 PBP1A family penicillin-binding protein -
  LFL98_RS11260 (LFL98_11265) ypoC 2200884..2201378 (-) 495 WP_144483031.1 YpoC family protein -
  LFL98_RS11265 (LFL98_11270) nth 2201375..2202034 (-) 660 WP_009967580.1 endonuclease III -
  LFL98_RS11270 (LFL98_11275) dnaD 2202053..2202751 (-) 699 WP_004398499.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=754620 LFL98_RS11250 WP_004399067.1 2197422..2198042(+) (recU) [Bacillus subtilis strain HY2-62]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=754620 LFL98_RS11250 WP_004399067.1 2197422..2198042(+) (recU) [Bacillus subtilis strain HY2-62]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1