Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LFL98_RS07820 Genome accession   NZ_CP110365
Coordinates   1484092..1484370 (+) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain HY2-62     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 1479092..1489370
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS07800 (LFL98_07805) - 1480281..1481192 (+) 912 WP_038427635.1 ketopantoate reductase family protein -
  LFL98_RS07805 (LFL98_07810) ampS 1481225..1482457 (-) 1233 WP_003232341.1 aminopeptidase -
  LFL98_RS07810 (LFL98_07815) ykpC 1482566..1482700 (-) 135 WP_003238865.1 protein YkpC -
  LFL98_RS07815 (LFL98_07820) mreBH 1482801..1483808 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  LFL98_RS07820 (LFL98_07825) abrB 1484092..1484370 (+) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  LFL98_RS07825 (LFL98_07830) kinC 1484560..1485846 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  LFL98_RS07830 (LFL98_07835) ykqA 1485862..1486689 (+) 828 WP_167559812.1 gamma-glutamylcyclotransferase -
  LFL98_RS07835 (LFL98_07840) ktrC 1486752..1487417 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  LFL98_RS07840 (LFL98_07845) ade 1487573..1489306 (+) 1734 WP_277737120.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=754615 LFL98_RS07820 WP_003244728.1 1484092..1484370(+) (abrB) [Bacillus subtilis strain HY2-62]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=754615 LFL98_RS07820 WP_003244728.1 1484092..1484370(+) (abrB) [Bacillus subtilis strain HY2-62]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576