Detailed information    

insolico Bioinformatically predicted

Overview

Name   rok   Type   Regulator
Locus tag   LFL98_RS07700 Genome accession   NZ_CP110365
Coordinates   1460016..1460591 (+) Length   191 a.a.
NCBI ID   WP_003232378.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1455016..1465591
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS07670 (LFL98_07675) dapD 1455202..1455912 (+) 711 WP_003218680.1 2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-acetyltransferase -
  LFL98_RS07675 (LFL98_07680) dapI 1455982..1457106 (+) 1125 WP_003232383.1 N-acetyldiaminopimelate deacetylase -
  LFL98_RS07680 (LFL98_07685) ykuS 1457168..1457413 (+) 246 WP_003232382.1 YkuS family protein -
  LFL98_RS07685 (LFL98_07690) mscT 1457450..1458253 (-) 804 WP_003244994.1 small-conductance mechanosensitive channel protein MscT -
  LFL98_RS07690 (LFL98_07695) ahpA 1458490..1459032 (+) 543 WP_003245371.1 biofilm-specific peroxidase AhpA -
  LFL98_RS07695 (LFL98_07700) ykuV 1459104..1459550 (+) 447 WP_015252187.1 thiol-disulfide oxidoreductase YkuV -
  LFL98_RS07700 (LFL98_07705) rok 1460016..1460591 (+) 576 WP_003232378.1 transcriptional regulator Rok Regulator
  LFL98_RS07705 (LFL98_07710) cse15 1460632..1461597 (-) 966 WP_048654871.1 spore protein Cse15 -
  LFL98_RS07710 (LFL98_07715) mobA 1461734..1462333 (+) 600 WP_014479670.1 molybdenum cofactor guanylyltransferase -
  LFL98_RS07715 (LFL98_07720) moeB 1462384..1463403 (+) 1020 WP_032721477.1 molybdopterin-synthase adenylyltransferase MoeB -
  LFL98_RS07720 (LFL98_07725) glp 1463421..1464713 (+) 1293 WP_029317736.1 gephyrin-like molybdotransferase Glp -
  LFL98_RS07725 (LFL98_07730) mobB 1464674..1465195 (+) 522 WP_003232370.1 molybdopterin-guanine dinucleotide biosynthesis protein B -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 21839.85 Da        Isoelectric Point: 9.8633

>NTDB_id=754614 LFL98_RS07700 WP_003232378.1 1460016..1460591(+) (rok) [Bacillus subtilis strain HY2-62]
MFNEREALRLRLEQLNEAEVKVIREYQIERDKIYAKLRELDRNGSPSEIKKDFRSEKKPDSLPVLAELAAQEIRSYQPQS
QQQSVQPQLQSISSLPAGIPDGTTRRRRGTARPGSKAAKLREAAIKTLKRHNAAIKSSELQKEIEKESGLEIPNMTTFMQ
SLIKMYPEVKKPYRGQYILEGEIESAESANE

Nucleotide


Download         Length: 576 bp        

>NTDB_id=754614 LFL98_RS07700 WP_003232378.1 1460016..1460591(+) (rok) [Bacillus subtilis strain HY2-62]
ATGTTTAATGAAAGAGAAGCTTTGCGCTTGCGGTTAGAACAATTAAATGAAGCTGAAGTGAAAGTCATTCGTGAATATCA
AATTGAACGTGATAAAATATACGCAAAATTAAGAGAGCTGGACAGAAATGGAAGCCCTTCTGAAATCAAAAAGGATTTCC
GTTCTGAAAAAAAACCTGACTCTCTGCCGGTTCTCGCTGAGCTTGCGGCTCAGGAAATCAGAAGCTATCAGCCGCAATCA
CAGCAGCAGTCTGTTCAGCCTCAGCTTCAATCTATTTCCTCTCTTCCTGCCGGTATACCAGACGGAACAACACGAAGAAG
AAGAGGAACGGCAAGACCGGGATCAAAAGCAGCTAAGCTGCGTGAAGCTGCTATTAAAACATTAAAACGCCACAACGCGG
CGATTAAGAGCTCGGAGCTTCAAAAAGAGATTGAAAAAGAAAGCGGTCTTGAAATCCCTAATATGACAACATTTATGCAA
AGCTTAATTAAAATGTACCCGGAAGTGAAAAAGCCATATCGCGGGCAGTACATTTTAGAGGGTGAAATCGAATCTGCAGA
ATCAGCAAATGAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rok Bacillus subtilis subsp. subtilis str. 168

100

100

1