Detailed information    

insolico Bioinformatically predicted

Overview

Name   kre   Type   Regulator
Locus tag   LFL98_RS07600 Genome accession   NZ_CP110365
Coordinates   1444136..1444600 (-) Length   154 a.a.
NCBI ID   WP_003232406.1    Uniprot ID   G4NVM0
Organism   Bacillus subtilis strain HY2-62     
Function   regulation of regulators (predicted from homology)   
Competence regulation

Genomic Context

Location: 1439136..1449600
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS07580 (LFL98_07585) kinA 1439603..1441423 (+) 1821 WP_101502063.1 sporulation histidine kinase KinA -
  LFL98_RS07585 (LFL98_07590) dapX 1441433..1442614 (-) 1182 WP_015252196.1 aminotransferase A -
  LFL98_RS07590 (LFL98_07595) - 1442816..1442977 (-) 162 WP_273796735.1 hypothetical protein -
  LFL98_RS07595 (LFL98_07600) cheV 1443181..1444092 (+) 912 WP_014476655.1 chemotaxis protein CheV -
  LFL98_RS07600 (LFL98_07605) kre 1444136..1444600 (-) 465 WP_003232406.1 YkyB family protein Regulator
  LFL98_RS07605 (LFL98_07610) ykuC 1444726..1446018 (-) 1293 WP_015252195.1 MFS transporter -
  LFL98_RS07610 (LFL98_07615) ltdD 1446094..1446588 (-) 495 WP_072174092.1 L,D-transpeptidase family protein -
  LFL98_RS07615 (LFL98_07620) ppeE 1446645..1447505 (-) 861 WP_003232400.1 metallophosphoesterase -
  LFL98_RS07620 (LFL98_07625) fadH 1447648..1448412 (+) 765 WP_015383534.1 2,4-dienoyl-CoA reductase -

Sequence

Protein


Download         Length: 154 a.a.        Molecular weight: 17895.71 Da        Isoelectric Point: 10.3545

>NTDB_id=754613 LFL98_RS07600 WP_003232406.1 1444136..1444600(-) (kre) [Bacillus subtilis strain HY2-62]
MDDHAYTKDLQPTVENLSKAVYTVNRHAKTAPNPKYLYLLKKRALQKLVKEGKGKKIGLHFSKNPRFSQQQSDVLISIGD
YYFHMPPTKEDFEHLPHLGTLNQSYRNPKAQMSLTKAKHLLQEYVGMKEKPLVPNRQQPAYHKPVFKKLGESYF

Nucleotide


Download         Length: 465 bp        

>NTDB_id=754613 LFL98_RS07600 WP_003232406.1 1444136..1444600(-) (kre) [Bacillus subtilis strain HY2-62]
ATGGACGACCATGCATATACGAAAGATCTGCAGCCAACCGTAGAAAATCTTTCAAAAGCAGTTTACACTGTGAACCGCCA
TGCAAAAACCGCCCCCAACCCTAAATACCTATATCTGCTGAAAAAACGGGCTTTGCAAAAGCTTGTCAAAGAAGGTAAAG
GAAAGAAAATAGGGCTTCATTTTTCAAAAAATCCAAGGTTCAGCCAACAGCAATCGGACGTGCTTATCTCAATCGGAGAC
TACTATTTTCACATGCCTCCAACTAAAGAAGACTTCGAACATCTTCCGCATTTAGGTACACTTAATCAATCGTACCGAAA
TCCTAAAGCTCAAATGTCTTTAACAAAAGCGAAACACCTATTGCAAGAATATGTCGGCATGAAAGAAAAGCCGCTAGTGC
CAAATCGCCAGCAGCCAGCTTACCATAAACCGGTCTTTAAAAAACTTGGCGAGAGTTACTTTTAA

Domains

Predicted by InterproScan.

YkyB-like protein (YkyB)

(14-128)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NVM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kre Bacillus subtilis subsp. subtilis str. 168

100

100

1