Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   LFL98_RS05580 Genome accession   NZ_CP110365
Coordinates   1076266..1076844 (+) Length   192 a.a.
NCBI ID   WP_029317573.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1071266..1081844
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS05560 (LFL98_05565) hemAT 1071777..1073075 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  LFL98_RS05565 (LFL98_05570) yhfW 1073214..1074743 (-) 1530 WP_277737040.1 FAD-dependent oxidoreductase -
  LFL98_RS05570 (LFL98_05575) yhxC 1074855..1075712 (+) 858 WP_192858349.1 SDR family oxidoreductase -
  LFL98_RS05575 (LFL98_05580) yhzC 1075740..1075973 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  LFL98_RS05580 (LFL98_05585) comK 1076266..1076844 (+) 579 WP_029317573.1 competence transcription factor ComK Regulator
  LFL98_RS05585 (LFL98_05590) yhxD 1076891..1077790 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  LFL98_RS05590 (LFL98_05595) yhjA 1078007..1078276 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  LFL98_RS05595 (LFL98_05600) yhjB 1078319..1079788 (-) 1470 WP_076457898.1 sodium:solute symporter -
  LFL98_RS05600 (LFL98_05605) yhjC 1079785..1079985 (-) 201 WP_024571728.1 DUF3311 domain-containing protein -
  LFL98_RS05605 (LFL98_05610) - 1080184..1080555 (-) 372 WP_014476361.1 hypothetical protein -
  LFL98_RS05610 (LFL98_05615) yhjE 1080707..1081330 (+) 624 WP_010886465.1 VTT domain-containing protein -
  LFL98_RS05615 (LFL98_05620) lepB 1081332..1081838 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22457.70 Da        Isoelectric Point: 7.7156

>NTDB_id=754601 LFL98_RS05580 WP_029317573.1 1076266..1076844(+) (comK) [Bacillus subtilis strain HY2-62]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSRIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=754601 LFL98_RS05580 WP_029317573.1 1076266..1076844(+) (comK) [Bacillus subtilis strain HY2-62]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAGAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTTGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCATTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

99.479

100

0.995