Detailed information
Bioinformatically predicted
Overview
| Name | sxy/tfoX | Type | Regulator |
| Locus tag | VEGS_RS13940 | Genome accession | NZ_AP021891 |
| Coordinates | 2865767..2866396 (-) | Length | 209 a.a. |
| NCBI ID | WP_000839153.1 | Uniprot ID | A0A9Q6Y251 |
| Organism | Escherichia coli strain 2017.01.04CC | ||
| Function | positive regulator of competence gene (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2856595..2893968 | 2865767..2866396 | within | 0 |
Gene organization within MGE regions
Location: 2856595..2893968
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| VEGS_RS13890 (VEGS01_26960) | tusE | 2856866..2857195 (+) | 330 | WP_000904442.1 | sulfurtransferase TusE | - |
| VEGS_RS13895 (VEGS01_26970) | yccX | 2857192..2857470 (-) | 279 | WP_000048252.1 | acylphosphatase | - |
| VEGS_RS13900 (VEGS01_26980) | rlmI | 2857565..2858755 (+) | 1191 | WP_000116297.1 | 23S rRNA (cytosine(1962)-C(5))-methyltransferase RlmI | - |
| VEGS_RS13905 (VEGS01_26990) | hspQ | 2858813..2859130 (+) | 318 | WP_001295356.1 | heat shock protein HspQ | - |
| VEGS_RS13910 (VEGS01_27000) | yccU | 2859175..2859588 (-) | 414 | WP_001301418.1 | CoA-binding protein | - |
| VEGS_RS13915 (VEGS01_27010) | yccT | 2859761..2860423 (+) | 663 | WP_000847791.1 | DUF2057 family protein | - |
| VEGS_RS13920 (VEGS01_27020) | mgsA | 2860519..2860977 (+) | 459 | WP_000424181.1 | methylglyoxal synthase | - |
| VEGS_RS13925 (VEGS01_27030) | helD | 2861009..2863063 (-) | 2055 | WP_001295354.1 | DNA helicase IV | - |
| VEGS_RS13930 (VEGS01_27040) | yccF | 2863186..2863632 (+) | 447 | WP_001261235.1 | YccF domain-containing protein | - |
| VEGS_RS13935 (VEGS01_27050) | yccS | 2863642..2865804 (+) | 2163 | WP_000875061.1 | YccS family putative transporter | - |
| VEGS_RS13940 (VEGS01_27060) | sxy/tfoX | 2865767..2866396 (-) | 630 | WP_000839153.1 | CRP-S regulon transcriptional coactivator Sxy | Regulator |
| VEGS_RS13945 (VEGS01_27070) | sulA | 2866615..2867124 (+) | 510 | WP_001554869.1 | SOS-induced cell division inhibitor SulA | - |
| VEGS_RS13950 (VEGS01_27090) | ompA | 2867481..2868521 (+) | 1041 | WP_000750416.1 | porin OmpA | - |
| VEGS_RS13955 (VEGS01_27100) | - | 2868579..2869553 (-) | 975 | WP_012478345.1 | IS30-like element ISApl1 family transposase | - |
| VEGS_RS13960 (VEGS01_27110) | matP | 2869669..2870121 (-) | 453 | WP_000877161.1 | macrodomain Ter protein MatP | - |
| VEGS_RS13965 (VEGS01_27120) | ycbZ | 2870307..2872067 (+) | 1761 | WP_000156518.1 | Lon protease family protein | - |
| VEGS_RS13970 (VEGS01_27130) | fabA | 2872136..2872654 (+) | 519 | WP_000227927.1 | bifunctional 3-hydroxydecanoyl-ACP dehydratase/trans-2-decenoyl-ACP isomerase | - |
| VEGS_RS13975 (VEGS01_27140) | rmf | 2872724..2872891 (-) | 168 | WP_000828648.1 | ribosome modulation factor | - |
| VEGS_RS13980 (VEGS01_27150) | pqiC | 2873147..2873710 (-) | 564 | WP_000759118.1 | membrane integrity-associated transporter subunit PqiC | - |
| VEGS_RS13985 (VEGS01_27160) | pqiB | 2873707..2875347 (-) | 1641 | WP_000445533.1 | intermembrane transport protein PqiB | - |
| VEGS_RS13990 (VEGS01_27170) | pqiA | 2875352..2876605 (-) | 1254 | WP_000333176.1 | membrane integrity-associated transporter subunit PqiA | - |
| VEGS_RS13995 (VEGS01_27180) | uup | 2876735..2878642 (-) | 1908 | WP_000053099.1 | ABC transporter ATP-binding protein | - |
| VEGS_RS14000 (VEGS01_27190) | rlmKL | 2878654..2880762 (-) | 2109 | WP_001086539.1 | bifunctional 23S rRNA (guanine(2069)-N(7))-methyltransferase RlmK/23S rRNA (guanine(2445)-N(2))-methyltransferase RlmL | - |
| VEGS_RS14005 (VEGS01_27200) | ycbX | 2881006..2882115 (+) | 1110 | WP_000212426.1 | 6-N-hydroxylaminopurine resistance protein YcbX | - |
| VEGS_RS14010 (VEGS01_27210) | zapC | 2882112..2882654 (-) | 543 | WP_001295353.1 | cell division protein ZapC | - |
| VEGS_RS14015 (VEGS01_27220) | pyrD | 2882828..2883838 (-) | 1011 | WP_001295352.1 | quinone-dependent dihydroorotate dehydrogenase | - |
| VEGS_RS14020 (VEGS01_27240) | ycbF | 2883949..2884686 (-) | 738 | Protein_2778 | fimbrial chaperone | - |
| VEGS_RS14025 (VEGS01_27250) | ycbV | 2884652..2885167 (-) | 516 | WP_000919497.1 | fimbrial protein | - |
| VEGS_RS14030 (VEGS01_27260) | ycbU | 2885175..2885717 (-) | 543 | WP_023281170.1 | fimbrial protein | - |
| VEGS_RS14035 (VEGS01_27270) | elfG | 2885729..2886799 (-) | 1071 | WP_001165668.1 | fimbrial protein | - |
| VEGS_RS14040 (VEGS01_27280) | elfC | 2886790..2889390 (-) | 2601 | WP_000286333.1 | fimbrial biogenesis usher protein | - |
| VEGS_RS14045 (VEGS01_27290) | elfD | 2889415..2890116 (-) | 702 | WP_016242023.1 | molecular chaperone | - |
| VEGS_RS14050 (VEGS01_27300) | elfA | 2890199..2890738 (-) | 540 | WP_000750304.1 | fimbrial protein | - |
| VEGS_RS14055 (VEGS01_27310) | ssuE | 2891094..2891669 (+) | 576 | WP_001263933.1 | NADPH-dependent FMN reductase | - |
| VEGS_RS14060 (VEGS01_27320) | ssuA | 2891662..2892621 (+) | 960 | WP_023281169.1 | aliphatic sulfonate ABC transporter substrate-binding protein SsuA | - |
| VEGS_RS14065 (VEGS01_27330) | ssuD | 2892618..2893763 (+) | 1146 | WP_000056007.1 | FMNH2-dependent alkanesulfonate monooxygenase | - |
Sequence
Protein
Download Length: 209 a.a. Molecular weight: 24147.02 Da Isoelectric Point: 9.2180
>NTDB_id=75460 VEGS_RS13940 WP_000839153.1 2865767..2866396(-) (sxy/tfoX) [Escherichia coli strain 2017.01.04CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE
Nucleotide
Download Length: 630 bp
>NTDB_id=75460 VEGS_RS13940 WP_000839153.1 2865767..2866396(-) (sxy/tfoX) [Escherichia coli strain 2017.01.04CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| sxy/tfoX | Escherichia coli BW25113 strain K-12 |
100 |
100 |
1 |