Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   LFL98_RS01945 Genome accession   NZ_CP110365
Coordinates   362648..363097 (-) Length   149 a.a.
NCBI ID   WP_017696127.1    Uniprot ID   -
Organism   Bacillus subtilis strain HY2-62     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 357648..368097
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS01910 (LFL98_01910) yckA 357917..358597 (-) 681 WP_003234624.1 amino acid ABC transporter permease -
  LFL98_RS01915 (LFL98_01915) yckB 358607..359470 (-) 864 WP_080479507.1 transporter substrate-binding domain-containing protein -
  LFL98_RS01920 (LFL98_01920) - 359632..359828 (+) 197 Protein_334 hypothetical protein -
  LFL98_RS01925 (LFL98_01925) - 359865..360185 (+) 321 Protein_335 RDD family protein -
  LFL98_RS01930 (LFL98_01930) yckD 360267..360599 (+) 333 WP_015252849.1 YckD family protein -
  LFL98_RS01935 (LFL98_01935) bglC 360753..362186 (+) 1434 WP_277736907.1 6-phospho-beta-glucosidase -
  LFL98_RS01940 (LFL98_01940) nin/comJ 362223..362621 (-) 399 WP_015252845.1 DNA-entry nuclease inhibitor Regulator
  LFL98_RS01945 (LFL98_01945) nucA/comI 362648..363097 (-) 450 WP_017696127.1 DNA-entry nuclease Machinery gene
  LFL98_RS01950 (LFL98_01950) tlpC 363265..364986 (-) 1722 WP_277736908.1 methyl-accepting chemotaxis protein TlpC -
  LFL98_RS01955 (LFL98_01955) hxlB 365097..365654 (-) 558 WP_069322365.1 6-phospho-3-hexuloisomerase -
  LFL98_RS01960 (LFL98_01960) hxlA 365660..366292 (-) 633 WP_032724921.1 3-hexulose-6-phosphate synthase -
  LFL98_RS01965 (LFL98_01965) hxlR 366524..366886 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16412.34 Da        Isoelectric Point: 4.5282

>NTDB_id=754590 LFL98_RS01945 WP_017696127.1 362648..363097(-) (nucA/comI) [Bacillus subtilis strain HY2-62]
MNITTDIIKTILLVIVIIAAAAAGLIKGDFFSADQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=754590 LFL98_RS01945 WP_017696127.1 362648..363097(-) (nucA/comI) [Bacillus subtilis strain HY2-62]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGCCGGCCTGATAAA
AGGAGACTTTTTCTCAGCTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGAT
ATCCCGAAACGGCCAAGCATATTAAGGATGCGATAAATGAGGGGCACTCAGAGGTGTGCACTATCGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98