Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   LFL98_RS00245 Genome accession   NZ_CP110365
Coordinates   43947..44237 (-) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain HY2-62     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 38947..49237
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LFL98_RS00205 (LFL98_00205) darA 39060..39389 (+) 330 WP_003242755.1 cyclic di-AMP receptor DarA -
  LFL98_RS00210 (LFL98_00210) yaaR 39402..39842 (+) 441 WP_009966249.1 YaaR family protein -
  LFL98_RS00215 (LFL98_00215) holB 39854..40843 (+) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  LFL98_RS00220 (LFL98_00220) - 40846..41583 (+) 738 WP_277736853.1 stage 0 sporulation family protein -
  LFL98_RS00225 (LFL98_00225) yabA 41598..41957 (+) 360 WP_003218308.1 replication initiation-control protein YabA -
  LFL98_RS00230 (LFL98_00230) trmNF 42016..42759 (+) 744 WP_015715095.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  LFL98_RS00235 (LFL98_00235) yazA 42746..43045 (+) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  LFL98_RS00240 (LFL98_00240) rsmI 43020..43898 (+) 879 WP_019712967.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  LFL98_RS00245 (LFL98_00245) abrB 43947..44237 (-) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  LFL98_RS00250 (LFL98_00250) metG 44732..46726 (+) 1995 WP_089172433.1 methionine--tRNA ligase -
  LFL98_RS00255 (LFL98_00255) dayD 46805..47572 (+) 768 WP_277736854.1 TatD family hydrolase -
  LFL98_RS00260 (LFL98_00260) yabE 47728..49041 (+) 1314 WP_087614203.1 ubiquitin-like domain-containing protein -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=754585 LFL98_RS00245 WP_003226760.1 43947..44237(-) (abrB) [Bacillus subtilis strain HY2-62]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=754585 LFL98_RS00245 WP_003226760.1 43947..44237(-) (abrB) [Bacillus subtilis strain HY2-62]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1