Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoN/rpoN1   Type   Machinery gene
Locus tag   ONR73_RS01630 Genome accession   NZ_CP110364
Coordinates   337122..338561 (+) Length   479 a.a.
NCBI ID   WP_005336331.1    Uniprot ID   A0A0T6N7F3
Organism   Aeromonas veronii strain C4     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 332122..343561
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ONR73_RS01600 (ONR73_01600) mlaF 332699..333499 (-) 801 WP_005336343.1 phospholipid ABC transporter ATP-binding protein MlaF -
  ONR73_RS01605 (ONR73_01605) - 333707..334702 (+) 996 WP_005336342.1 KpsF/GutQ family sugar-phosphate isomerase -
  ONR73_RS01610 (ONR73_01610) kdsC 334702..335256 (+) 555 WP_108542371.1 3-deoxy-manno-octulosonate-8-phosphatase KdsC -
  ONR73_RS01615 (ONR73_01615) lptC 335253..335813 (+) 561 WP_005336338.1 LPS export ABC transporter periplasmic protein LptC -
  ONR73_RS01620 (ONR73_01620) lptA 335800..336327 (+) 528 WP_040068817.1 lipopolysaccharide transport periplasmic protein LptA -
  ONR73_RS01625 (ONR73_01625) lptB 336331..337056 (+) 726 WP_005336333.1 LPS export ABC transporter ATP-binding protein -
  ONR73_RS01630 (ONR73_01630) rpoN/rpoN1 337122..338561 (+) 1440 WP_005336331.1 RNA polymerase factor sigma-54 Machinery gene
  ONR73_RS01635 (ONR73_01635) hpf 338582..338869 (+) 288 WP_005336323.1 ribosome hibernation promoting factor -
  ONR73_RS01640 (ONR73_01640) ptsN 338872..339318 (+) 447 WP_127006240.1 PTS IIA-like nitrogen regulatory protein PtsN -
  ONR73_RS01645 (ONR73_01645) rapZ 339364..340230 (+) 867 WP_265061972.1 RNase adapter RapZ -
  ONR73_RS01650 (ONR73_01650) npr 340251..340523 (+) 273 WP_005336318.1 PTS phosphocarrier protein NPr -
  ONR73_RS01655 (ONR73_01655) - 340541..342445 (-) 1905 WP_265061973.1 transcription antiterminator -
  ONR73_RS01660 (ONR73_01660) dagF 342553..343293 (-) 741 WP_265061974.1 2-dehydro-3-deoxy-phosphogluconate aldolase -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 53701.64 Da        Isoelectric Point: 4.3442

>NTDB_id=754555 ONR73_RS01630 WP_005336331.1 337122..338561(+) (rpoN/rpoN1) [Aeromonas veronii strain C4]
MKPTLQLRLGQSLTMTPQLQQAIRLLQLSTLELQQEIQQALENNPLLEQEESEAQETSPEAPVDASQLDSSDAMAQEQMP
DELPVDTTWDEVYSAGTAQSAGPIHDGEDSVYQGETTENLQDYLLWQMRLTPFSDVDAAIALAIIDAIDESGYLTVALED
IQAAVTSDDVEVELDEVEAVLKRVQHFDPVGIAARSVQECLLIQLDQYDPQTPWLNEAKEVILEHMELLGNRDYRTLARK
TKLKESDLKEVLDLIQLLEPRPGNGIIQSDSQYVIPDVSVVKKGSKWVVELNPDSAPRIRVNETYAAMARNARSSTDTQF
IRSHLQEAKWFIKSLESRNDTLLKVASCIVEQQQGFFEYGEEAMKPMVLNDIAEAVEMHESTISRVTTQKYMHTPRGIFE
LKFFFSSHVNTEGGGECSSTAIRALIKKLVTAENPAKPLSDSKIADLLAEQGIMVARRTIAKYRESLFIPPSNQRKRLV

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=754555 ONR73_RS01630 WP_005336331.1 337122..338561(+) (rpoN/rpoN1) [Aeromonas veronii strain C4]
ATGAAGCCGACATTACAGTTGCGTCTCGGTCAGTCCCTGACCATGACGCCGCAATTACAACAAGCGATTCGTCTGCTCCA
GCTCTCCACTCTGGAACTTCAGCAGGAAATTCAGCAAGCGCTCGAAAACAACCCTCTGCTGGAGCAGGAAGAGAGCGAGG
CGCAAGAGACCAGTCCGGAAGCGCCGGTCGATGCCAGCCAGCTGGATTCCAGCGATGCCATGGCTCAGGAGCAGATGCCG
GACGAGTTGCCGGTGGATACCACCTGGGACGAGGTTTACTCTGCCGGCACCGCCCAGAGCGCGGGCCCCATCCACGATGG
GGAAGATAGCGTCTATCAGGGTGAAACCACCGAAAACCTGCAGGATTATCTGCTGTGGCAGATGCGACTCACACCGTTCA
GTGATGTGGATGCCGCCATCGCGCTCGCCATCATCGATGCCATCGACGAATCCGGTTATCTGACCGTTGCGCTGGAGGAT
ATCCAGGCTGCCGTCACCAGCGATGACGTAGAGGTGGAGCTCGATGAGGTCGAGGCGGTACTCAAGCGGGTGCAGCACTT
CGATCCGGTCGGCATTGCTGCCCGTTCTGTGCAGGAGTGTTTGCTGATCCAGCTGGATCAGTATGACCCGCAGACCCCCT
GGCTCAACGAGGCCAAGGAGGTGATCCTCGAGCACATGGAGCTGCTCGGCAACCGGGATTACCGCACCCTCGCCCGCAAG
ACAAAACTCAAGGAGAGCGACCTCAAGGAGGTGCTGGATCTGATCCAGCTGCTGGAGCCGCGTCCCGGTAACGGCATCAT
CCAGAGCGACTCCCAGTACGTGATCCCCGACGTCTCCGTGGTCAAGAAGGGCAGCAAGTGGGTGGTCGAGCTCAATCCCG
ACTCCGCCCCCCGCATCCGGGTCAACGAGACCTATGCCGCCATGGCCCGCAACGCCCGCAGCAGCACCGACACCCAGTTT
ATTCGCTCCCATTTGCAGGAAGCCAAGTGGTTCATCAAGAGCCTGGAAAGTCGCAATGACACCCTGCTGAAAGTGGCCAG
TTGCATTGTCGAGCAGCAACAGGGCTTTTTCGAGTATGGTGAAGAGGCGATGAAGCCGATGGTGCTCAATGACATCGCCG
AAGCGGTAGAGATGCATGAGTCGACCATCTCCCGGGTGACGACCCAGAAGTACATGCATACCCCCCGTGGTATCTTCGAA
TTGAAGTTTTTTTTCTCCAGCCATGTGAACACCGAAGGAGGAGGAGAGTGCTCATCGACCGCAATTCGCGCGCTCATCAA
GAAGCTGGTCACGGCAGAGAATCCTGCCAAGCCGTTAAGTGATAGCAAGATCGCGGATTTGCTGGCCGAACAGGGTATTA
TGGTGGCGAGACGCACGATCGCTAAGTATCGCGAATCCTTGTTTATCCCACCTTCCAATCAGCGCAAACGCCTGGTTTAG

Domains

Predicted by InterproScan.

Sigma-54 factor, core binding domain (Sigma54_CBD)

(116-305)

Sigma-54, DNA binding domain (Sigma54_DBD)

(319-477)

Sigma-54 factor, Activator interacting domain (AID) (Sigma54_AID)

(5-48)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0T6N7F3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoN/rpoN1 Ralstonia pseudosolanacearum GMI1000

45.988

100

0.491