Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA47_RS25130 Genome accession   NZ_CP110352
Coordinates   5404725..5405282 (+) Length   185 a.a.
NCBI ID   WP_003102600.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA47     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5399725..5410282
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA47_RS25110 (PALA47_04966) pilR 5401001..5402338 (+) 1338 WP_003094694.1 two-component system response regulator PilR Regulator
  PALA47_RS25115 (PALA47_04967) thiO 5402384..5403478 (-) 1095 WP_020750388.1 glycine oxidase ThiO -
  PALA47_RS25120 (PALA47_04968) - 5403613..5404122 (+) 510 WP_003102595.1 GspH/FimT family pseudopilin -
  PALA47_RS25125 (PALA47_04969) - 5404228..5404734 (+) 507 WP_003102598.1 GspH/FimT family pseudopilin -
  PALA47_RS25130 (PALA47_04970) pilV 5404725..5405282 (+) 558 WP_003102600.1 type 4a pilus minor pilin PilV Machinery gene
  PALA47_RS25135 (PALA47_04971) pilW 5405279..5406103 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA47_RS25140 (PALA47_04972) pilX 5406100..5406687 (+) 588 WP_003102605.1 type 4a pilus minor pilin PilX -
  PALA47_RS25145 (PALA47_04973) pilY1 5406699..5410190 (+) 3492 WP_003102607.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20047.13 Da        Isoelectric Point: 8.2254

>NTDB_id=754446 PALA47_RS25130 WP_003102600.1 5404725..5405282(+) (pilV) [Pseudomonas aeruginosa strain PALA47]
MLLKSRHRSLHQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVDRNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=754446 PALA47_RS25130 WP_003102600.1 5404725..5405282(+) (pilV) [Pseudomonas aeruginosa strain PALA47]
ATGCTATTGAAATCGCGACACAGGTCGCTGCACCAATCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGATCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCAAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTTGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(11-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

98.919

100

0.989