Detailed information NTG0754416

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP93_RS05660
• Genome accession: NZ_CP124339
• Coordinates: 1181642..1182634 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0713
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 1176642..1187634

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP93_RS05630 (QJP93_05630)	ispD	1176703..1177413 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP93_RS05635 (QJP93_05635)	ispF	1177413..1177892 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP93_RS05640 (QJP93_05640)	truD	1177889..1178938 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP93_RS05645 (QJP93_05645)	surE	1178919..1179680 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP93_RS05650 (QJP93_05650)	pcm	1179674..1180300 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP93_RS05655 (QJP93_05655)	nlpD	1180485..1181579 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP93_RS05660 (QJP93_05660)	rpoS	1181642..1182634 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP93_RS05665 (QJP93_05665)	-	1182805..1183356 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP93_RS05670 (QJP93_05670)	-	1183581..1184624 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP93_RS05675 (QJP93_05675)	ygbN	1184767..1186131 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP93_RS05680 (QJP93_05680)	ygbM	1186220..1186996 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=754416 QJP93_RS05660 WP_000081550.1 1181642..1182634(+) (rpoS) [Escherichia coli strain AVS0713]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=754416 QJP93_RS05660 WP_000081550.1 1181642..1182634(+) (rpoS) [Escherichia coli strain AVS0713]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715