Detailed information    

insolico Bioinformatically predicted

Overview

Name   exbB   Type   Machinery gene
Locus tag   PALA45_RS18425 Genome accession   NZ_CP110351
Coordinates   3981478..3982113 (-) Length   211 a.a.
NCBI ID   WP_012613901.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA45     
Function   ssDNA transport through the inner membrane (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3976478..3987113
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA45_RS18395 (PALA45_03657) murB 3977576..3978595 (-) 1020 WP_003124431.1 UDP-N-acetylmuramate dehydrogenase -
  PALA45_RS18400 (PALA45_03658) - 3978592..3979056 (-) 465 WP_003091154.1 low molecular weight protein-tyrosine-phosphatase -
  PALA45_RS18405 (PALA45_03659) kdsB 3979056..3979820 (-) 765 WP_003091155.1 3-deoxy-manno-octulosonate cytidylyltransferase -
  PALA45_RS18410 (PALA45_03660) - 3979820..3980005 (-) 186 WP_003091157.1 Trm112 family protein -
  PALA45_RS18415 (PALA45_03661) lpxK 3980043..3981041 (-) 999 WP_003091159.1 tetraacyldisaccharide 4'-kinase -
  PALA45_RS18420 (PALA45_03662) - 3981041..3981481 (-) 441 WP_003091161.1 ExbD/TolR family protein -
  PALA45_RS18425 (PALA45_03663) exbB 3981478..3982113 (-) 636 WP_012613901.1 MotA/TolQ/ExbB proton channel family protein Machinery gene
  PALA45_RS18430 (PALA45_03664) comA 3982186..3984411 (-) 2226 WP_003119806.1 DNA internalization-related competence protein ComEC/Rec2 Machinery gene
  PALA45_RS18435 (PALA45_03665) - 3984542..3985075 (+) 534 WP_003091165.1 DUF2062 domain-containing protein -
  PALA45_RS18440 (PALA45_03666) - 3985163..3986407 (-) 1245 WP_003113987.1 lipoprotein-releasing ABC transporter permease subunit -

Sequence

Protein


Download         Length: 211 a.a.        Molecular weight: 22875.99 Da        Isoelectric Point: 6.2522

>NTDB_id=754406 PALA45_RS18425 WP_012613901.1 3981478..3982113(-) (exbB) [Pseudomonas aeruginosa strain PALA45]
MWELVQAGGWMMLPIILSSIAATAIVAERLWTLRKSRVAPPELLGQVWKQINGKQLSAQKLKDLRANSPLGEILAAGLAN
SKHGREIMKECIEEAASGVIHELERYLNALGTIAAMAPLLGLLGTVFGMIQIFGAFMDNGMANSPMLAAGISKALITTAA
GLLVAIPAVFFHRYLLRRVDELVIAMEQEAIKLVEVVQGDREVDYVEEGKA

Nucleotide


Download         Length: 636 bp        

>NTDB_id=754406 PALA45_RS18425 WP_012613901.1 3981478..3982113(-) (exbB) [Pseudomonas aeruginosa strain PALA45]
GTGTGGGAACTGGTTCAAGCCGGCGGCTGGATGATGCTGCCGATCATTCTGAGTTCGATCGCCGCCACCGCCATCGTCGC
GGAGCGCCTGTGGACGCTGCGCAAGAGCCGCGTCGCGCCGCCCGAGCTGCTCGGCCAGGTGTGGAAGCAGATCAATGGCA
AACAACTGAGCGCCCAGAAGCTCAAGGACCTGCGCGCCAACTCGCCGCTGGGAGAGATCCTCGCCGCCGGTCTGGCCAAC
TCCAAGCACGGTCGCGAGATCATGAAGGAGTGCATCGAGGAGGCTGCTTCCGGTGTCATCCACGAGCTGGAGCGCTACCT
CAACGCCCTCGGCACCATCGCCGCGATGGCGCCGCTGCTGGGCCTGCTGGGTACGGTGTTCGGCATGATCCAGATCTTCG
GCGCCTTCATGGACAACGGCATGGCCAACTCGCCGATGCTCGCCGCGGGCATCTCCAAGGCATTGATCACCACCGCCGCC
GGCCTGCTGGTGGCGATTCCGGCGGTGTTCTTCCATCGCTACCTGCTGCGGCGGGTCGACGAACTGGTGATCGCCATGGA
GCAGGAGGCCATCAAGCTGGTGGAAGTGGTGCAGGGCGATCGTGAAGTCGACTACGTCGAGGAAGGCAAAGCGTGA

Domains

Predicted by InterproScan.

MotA/TolQ/ExbB proton channel family (MotA_ExbB)

(66-188)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  exbB Pseudomonas stutzeri DSM 10701

80.569

100

0.806