Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   QJP89_RS21770 Genome accession   NZ_CP124334
Coordinates   4479001..4479477 (-) Length   158 a.a.
NCBI ID   WP_001610807.1    Uniprot ID   -
Organism   Escherichia coli strain AVS0786     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4474001..4484477
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP89_RS21745 (QJP89_21745) dsdA 4474197..4475525 (-) 1329 WP_000426446.1 D-serine ammonia-lyase -
  QJP89_RS21750 (QJP89_21750) dsdX 4475543..4476880 (-) 1338 WP_000556035.1 D-serine transporter DsdX -
  QJP89_RS21755 (QJP89_21755) dsdC 4477098..4478033 (+) 936 WP_001296270.1 DNA-binding transcriptional regulator DsdC -
  QJP89_RS21760 (QJP89_21760) - 4478233..4478655 (-) 423 Protein_4256 type IV toxin-antitoxin system YeeU family antitoxin -
  QJP89_RS21765 (QJP89_21765) - 4478717..4478938 (-) 222 WP_000691817.1 DUF987 domain-containing protein -
  QJP89_RS21770 (QJP89_21770) radC 4479001..4479477 (-) 477 WP_001610807.1 RadC family protein Machinery gene
  QJP89_RS21775 (QJP89_21775) - 4479492..4479977 (-) 486 WP_001610806.1 antirestriction protein -
  QJP89_RS21780 (QJP89_21780) - 4480069..4480887 (-) 819 WP_001610805.1 DUF932 domain-containing protein -
  QJP89_RS21785 (QJP89_21785) - 4481215..4484061 (-) 2847 WP_063131951.1 Ag43/Cah family autotransporter adhesin -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17645.27 Da        Isoelectric Point: 7.2020

>NTDB_id=754298 QJP89_RS21770 WP_001610807.1 4479001..4479477(-) (radC) [Escherichia coli strain AVS0786]
MQQISFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLADIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=754298 QJP89_RS21770 WP_001610807.1 4479001..4479477(-) (radC) [Escherichia coli strain AVS0786]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTTAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
CGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392