Detailed information NTG0754289

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP89_RS20130
• Genome accession: NZ_CP124334
• Coordinates: 4137707..4138699 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0786
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4132707..4143699

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP89_RS20100 (QJP89_20100)	ispD	4132768..4133478 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP89_RS20105 (QJP89_20105)	ispF	4133478..4133957 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP89_RS20110 (QJP89_20110)	truD	4133954..4135003 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP89_RS20115 (QJP89_20115)	surE	4134984..4135745 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP89_RS20120 (QJP89_20120)	pcm	4135739..4136365 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP89_RS20125 (QJP89_20125)	nlpD	4136550..4137644 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP89_RS20130 (QJP89_20130)	rpoS	4137707..4138699 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP89_RS20135 (QJP89_20135)	-	4138870..4139421 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP89_RS20140 (QJP89_20140)	-	4139646..4140689 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP89_RS20145 (QJP89_20145)	ygbN	4140832..4142196 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP89_RS20150 (QJP89_20150)	ygbM	4142285..4143061 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=754289 QJP89_RS20130 WP_000081550.1 4137707..4138699(+) (rpoS) [Escherichia coli strain AVS0786]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=754289 QJP89_RS20130 WP_000081550.1 4137707..4138699(+) (rpoS) [Escherichia coli strain AVS0786]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715