Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   HRR22_RS07635 Genome accession   NZ_AP021890
Coordinates   1647488..1648117 (+) Length   209 a.a.
NCBI ID   WP_000839153.1    Uniprot ID   A0A9Q6Y251
Organism   Escherichia coli strain 2017.15.01CC     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1642488..1653117
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HRR22_RS07615 (VEGS12_14670) ycbZ 1642878..1644638 (-) 1761 WP_000156526.1 Lon protease family protein -
  HRR22_RS07620 (VEGS12_14680) matP 1644824..1645276 (+) 453 WP_000877158.1 macrodomain Ter protein MatP -
  HRR22_RS07625 (VEGS12_14690) ompA 1645351..1646403 (-) 1053 WP_000750419.1 porin OmpA -
  HRR22_RS07630 (VEGS12_14710) sulA 1646760..1647269 (-) 510 WP_000288710.1 SOS-induced cell division inhibitor SulA -
  HRR22_RS07635 (VEGS12_14720) sxy/tfoX 1647488..1648117 (+) 630 WP_000839153.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  HRR22_RS07640 (VEGS12_14730) yccS 1648080..1650242 (-) 2163 WP_000875015.1 YccS family putative transporter -
  HRR22_RS07645 (VEGS12_14740) yccF 1650252..1650698 (-) 447 WP_001261235.1 YccF domain-containing protein -
  HRR22_RS07650 (VEGS12_14750) helD 1650821..1652875 (+) 2055 WP_063122188.1 DNA helicase IV -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24147.02 Da        Isoelectric Point: 9.2180

>NTDB_id=75428 HRR22_RS07635 WP_000839153.1 1647488..1648117(+) (sxy/tfoX) [Escherichia coli strain 2017.15.01CC]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
SLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=75428 HRR22_RS07635 WP_000839153.1 1647488..1648117(+) (sxy/tfoX) [Escherichia coli strain 2017.15.01CC]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGCAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGGGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
AGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGTGCCATTATCGGCATTCATGAAGCTGCGCTCCCGGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterproScan.

TfoX N-terminal domain (TfoX_N)

(14-106)

TfoX C-terminal domain (TfoX_C)

(116-194)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

100

100

1

Multiple sequence alignment