Detailed information    

insolico Bioinformatically predicted

Overview

Name   fimV   Type   Machinery gene
Locus tag   PALA52_RS09300 Genome accession   NZ_CP110347
Coordinates   1987561..1990314 (+) Length   917 a.a.
NCBI ID   WP_270125235.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain PALA52     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1982561..1995314
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA52_RS09280 (PALA52_01841) - 1983196..1983957 (+) 762 WP_121305557.1 class I SAM-dependent methyltransferase -
  PALA52_RS09285 (PALA52_01842) leuB 1984016..1985098 (+) 1083 WP_024914995.1 3-isopropylmalate dehydrogenase -
  PALA52_RS09290 (PALA52_01843) asd 1985168..1986280 (+) 1113 WP_024914996.1 aspartate-semialdehyde dehydrogenase -
  PALA52_RS09295 (PALA52_01844) - 1986382..1987392 (+) 1011 WP_263957625.1 aspartate-semialdehyde dehydrogenase -
  PALA52_RS09300 (PALA52_01845) fimV 1987561..1990314 (+) 2754 WP_270125235.1 motility hub landmark protein FimV Machinery gene
  PALA52_RS09305 (PALA52_01846) truA 1990336..1991193 (+) 858 WP_003091390.1 tRNA pseudouridine(38-40) synthase TruA -
  PALA52_RS09310 (PALA52_01847) - 1991283..1991918 (+) 636 WP_024914999.1 phosphoribosylanthranilate isomerase -
  PALA52_RS09315 (PALA52_01848) accD 1992186..1993058 (+) 873 WP_023123101.1 acetyl-CoA carboxylase, carboxyltransferase subunit beta -
  PALA52_RS09320 (PALA52_01849) folC 1993055..1994344 (+) 1290 WP_121305554.1 bifunctional tetrahydrofolate synthase/dihydrofolate synthase -
  PALA52_RS09325 (PALA52_01850) - 1994348..1995001 (+) 654 WP_024915002.1 SPOR domain-containing protein -

Sequence

Protein


Download         Length: 917 a.a.        Molecular weight: 96807.94 Da        Isoelectric Point: 3.9290

>NTDB_id=754261 PALA52_RS09300 WP_270125235.1 1987561..1990314(+) (fimV) [Pseudomonas aeruginosa strain PALA52]
MVRLRTLVRAIAAASVLTSGMAHGLGLGEITLKSALNQPLDAEIELLEVRDLSSGEVIPSLASPEEFSKAGVDRLYYLTD
LKFTPVVKPNGKSVIRVTSSKPVQEPYLNFLVQVLWPNGRLLREYTVLLDPPLYSPQAAASVPQAPVSAPRATSAPRAPQ
APLRTTAPAGSDTYRTVSNDTLWEIAQRNRTDRVSVPQAMLAFQELNPGAFVDGNINRLKSGQVLRIPTEQQMLERSPRE
ALSQVQAQNQSWRGSRNPAAGSAGARQLDATQRNAAGSAPAKVDATDSLRLVSGEGKASKGADKGGKGDNKAIADTLAVT
KESLDSTRRENEELQSRMQDLQSQLDKLQKLIQLKDAQLAKLQGQLGAEGQGAAQPNAVQPDAAQSNAAAQAPAQAGTPA
AAAPTPAPVGEAPATPAQPPVAQPPAPAAEKPPAPAVPVQAPEQPAPSFLDELLANPLWLAVIGGSALLALLVLLMILSR
RNAQKEKEEAQAFAADAGEEQEDALDLGKDGFDDLTLDEPEPQVAAAAPQVEKTTAQTSDALGEADIYIAYGRFNQAAEL
LQNAIYDEPQRTDLRLKLMEVYAEMGDREGFARQENELREIGGAQPQVEQLKSRYPAMVAVAAVAGLAGAKLAQDELDSF
SLDDLSLDDSGHAAKPDAAGQDLDDAFDLSLDDLDGDLGGDDVQADLKSDSGALDDLTLDSDLDLAASTAADKPVDDLDF
GLDFAELAETPSQPKNDDLGDFSLDLDAPEDKLSDDDFLLSLNDEVPAAAPADNEFTLDTEAADEPALSLPDDFDLSLAD
EPAEPAAPAKSEDSFAAQLDEVSAQLDELASNLDEPKSAAPSFSAEDAAVASALDGDADDDFDFLSGADEAATKLDLARA
YIDMGDSEGARDILDEVLAEGNDSQQAEARELLERLA

Nucleotide


Download         Length: 2754 bp        

>NTDB_id=754261 PALA52_RS09300 WP_270125235.1 1987561..1990314(+) (fimV) [Pseudomonas aeruginosa strain PALA52]
ATGGTTCGGCTTCGTACACTGGTTCGGGCAATTGCGGCGGCCTCGGTTCTGACTTCCGGCATGGCACACGGATTGGGGCT
GGGGGAAATCACCCTGAAGTCGGCGTTGAACCAGCCGTTGGATGCCGAGATCGAGCTGCTCGAAGTTCGTGACCTGAGTT
CGGGCGAGGTGATCCCGAGCCTGGCGTCGCCGGAAGAGTTCAGCAAGGCGGGTGTCGATCGCCTGTACTACCTCACCGAC
CTGAAGTTCACGCCGGTGGTGAAGCCCAACGGCAAGAGCGTCATCCGCGTGACTTCGTCGAAGCCGGTGCAGGAACCCTA
CCTGAACTTCCTGGTCCAGGTGCTCTGGCCGAACGGCCGTCTGCTGCGCGAGTACACCGTCCTGCTGGATCCGCCGCTGT
ATTCCCCGCAGGCCGCGGCAAGCGTTCCGCAAGCGCCGGTCAGCGCGCCGCGCGCGACCAGCGCCCCGCGAGCCCCTCAG
GCTCCGCTGCGTACCACCGCGCCGGCAGGCAGTGACACCTATCGCACCGTTTCCAACGACACGCTCTGGGAGATCGCCCA
GCGCAACCGTACCGATCGCGTTTCCGTACCCCAGGCGATGCTCGCGTTCCAGGAACTGAATCCCGGCGCCTTCGTCGATG
GCAACATCAACCGGCTGAAGAGCGGCCAGGTGCTGCGCATTCCCACCGAACAGCAGATGCTGGAGCGCTCGCCGCGCGAG
GCGCTGTCCCAGGTGCAGGCGCAGAACCAGAGCTGGCGCGGCAGCCGCAATCCGGCCGCGGGCAGCGCCGGTGCCAGACA
GTTGGATGCGACCCAGCGCAATGCCGCCGGGTCGGCGCCAGCCAAGGTCGACGCCACGGACAGCTTGCGCCTGGTGTCCG
GCGAGGGCAAGGCCAGCAAGGGCGCCGACAAGGGCGGAAAAGGCGATAACAAGGCGATCGCCGATACCCTGGCGGTGACC
AAGGAAAGTCTCGATAGCACTCGCCGCGAGAACGAAGAGTTGCAGAGCCGCATGCAGGATTTGCAGAGCCAGTTGGACAA
GCTACAGAAGTTGATTCAGCTGAAAGACGCTCAGTTGGCCAAGCTGCAAGGGCAGTTGGGCGCCGAAGGCCAGGGCGCGG
CCCAGCCGAACGCAGTTCAGCCGGATGCGGCCCAGTCCAATGCAGCCGCGCAGGCACCGGCGCAAGCCGGGACTCCCGCT
GCGGCGGCGCCGACTCCTGCTCCGGTCGGAGAAGCCCCCGCCACTCCGGCGCAGCCCCCGGTCGCTCAGCCGCCCGCACC
GGCCGCCGAGAAGCCCCCGGCACCTGCCGTTCCGGTGCAGGCGCCAGAACAGCCGGCGCCGAGTTTCCTCGACGAGTTGC
TGGCCAACCCGCTGTGGCTGGCGGTGATCGGCGGCAGCGCACTGCTGGCATTGCTGGTGCTGTTGATGATCCTGTCGCGG
CGCAATGCGCAGAAAGAGAAGGAAGAAGCCCAGGCTTTCGCTGCGGATGCCGGCGAGGAACAGGAGGATGCGCTGGACCT
GGGAAAGGACGGCTTCGACGACCTGACCCTCGACGAGCCTGAACCGCAGGTCGCAGCCGCCGCTCCGCAGGTCGAGAAGA
CCACCGCGCAGACTTCCGATGCGCTGGGCGAGGCCGACATCTATATCGCCTACGGGCGTTTCAACCAGGCCGCCGAACTG
TTGCAGAACGCAATCTATGACGAGCCGCAGCGCACCGACCTGCGCCTCAAGCTGATGGAAGTCTATGCCGAGATGGGCGA
TCGCGAAGGTTTCGCTCGCCAGGAAAACGAACTGCGCGAAATCGGCGGCGCACAGCCGCAGGTCGAGCAGCTCAAGTCGC
GCTACCCGGCAATGGTGGCGGTCGCCGCGGTTGCCGGCCTGGCTGGCGCCAAGCTGGCGCAGGACGAGCTGGACAGCTTC
AGCCTCGACGACCTGTCGCTCGACGATAGCGGTCACGCGGCCAAGCCGGATGCGGCAGGTCAGGATCTCGACGATGCCTT
CGACCTGAGCCTGGACGACCTGGACGGCGATCTCGGCGGCGACGACGTACAGGCCGACCTCAAGTCCGACAGCGGGGCAT
TGGACGATCTGACCCTGGACAGCGATCTGGACCTGGCAGCCTCGACCGCGGCGGACAAGCCTGTCGACGATCTCGACTTC
GGCCTGGATTTCGCAGAGTTGGCGGAGACTCCGAGCCAGCCCAAGAATGACGACCTGGGTGACTTCTCGCTGGATCTCGA
CGCGCCGGAAGACAAGCTTTCGGATGACGATTTCCTGCTTTCGCTGAACGACGAGGTGCCGGCCGCGGCGCCCGCCGACA
ACGAATTCACCCTCGATACCGAGGCTGCCGACGAGCCGGCGTTGTCCCTGCCGGACGACTTCGACCTGTCGCTGGCCGAC
GAGCCGGCGGAGCCGGCCGCCCCGGCGAAGAGCGAGGACAGTTTCGCCGCCCAGCTGGATGAGGTGAGTGCGCAGTTGGA
CGAGTTGGCCAGCAATCTTGACGAGCCGAAGAGCGCGGCGCCGAGTTTCTCCGCCGAGGATGCGGCGGTTGCCTCTGCCC
TGGACGGAGACGCTGACGATGACTTCGACTTCCTCTCCGGTGCTGACGAGGCGGCGACCAAGCTGGATCTGGCTCGCGCC
TACATCGACATGGGCGATAGCGAAGGCGCGCGCGATATCCTCGATGAAGTACTGGCCGAAGGTAACGACAGCCAGCAGGC
GGAAGCCCGCGAGTTGCTGGAGCGCCTGGCCTGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  fimV Pseudomonas aeruginosa PAK

93.066

100

0.937