Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   PALA30_RS26585 Genome accession   NZ_CP110345
Coordinates   5639819..5640376 (+) Length   185 a.a.
NCBI ID   WP_003094697.1    Uniprot ID   A0A6N0KGD7
Organism   Pseudomonas aeruginosa strain PALA30     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5634819..5645376
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PALA30_RS26565 (PALA30_05230) pilR 5636095..5637432 (+) 1338 WP_003110427.1 two-component system response regulator PilR Regulator
  PALA30_RS26570 (PALA30_05231) thiO 5637478..5638572 (-) 1095 WP_031756968.1 glycine oxidase ThiO -
  PALA30_RS26575 (PALA30_05232) - 5638707..5639216 (+) 510 WP_009316266.1 GspH/FimT family pseudopilin -
  PALA30_RS26580 (PALA30_05233) - 5639322..5639828 (+) 507 WP_003110423.1 GspH/FimT family pseudopilin -
  PALA30_RS26585 (PALA30_05234) pilV 5639819..5640376 (+) 558 WP_003094697.1 type 4a pilus minor pilin PilV Machinery gene
  PALA30_RS26590 (PALA30_05235) pilW 5640373..5641197 (+) 825 WP_003119422.1 type 4a pilus minor pilin PilW -
  PALA30_RS26595 (PALA30_05236) pilX 5641194..5641781 (+) 588 WP_003094700.1 type 4a pilus minor pilin PilX -
  PALA30_RS26600 (PALA30_05237) pilY1 5641793..5645284 (+) 3492 WP_061194891.1 type 4a pilus biogenesis protein PilY1 -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20069.21 Da        Isoelectric Point: 8.2164

>NTDB_id=754210 PALA30_RS26585 WP_003094697.1 5639819..5640376(+) (pilV) [Pseudomonas aeruginosa strain PALA30]
MLLKSRHKPLYQSGFSMIEVLVALLLISIGVLGMIAMQGKTIQYTADSVERNKAAMLGSNLLESMRASPKALYDVKDQMA
TQSDFFKAKGSAFPTAPSSCTPLPDAIKDRLGCWAEQVKNELPGAGDLLKSDYYICRSSKPGDCDGKGSMLEIRLAWRGK
QGACVNAADSSADTSLCYYTLRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=754210 PALA30_RS26585 WP_003094697.1 5639819..5640376(+) (pilV) [Pseudomonas aeruginosa strain PALA30]
ATGCTATTGAAATCGCGGCACAAGCCGCTGTACCAGTCCGGCTTCAGCATGATCGAAGTGCTGGTCGCCCTGCTGCTGAT
CAGCATCGGCGTGCTGGGCATGATCGCCATGCAGGGCAAGACCATCCAGTACACCGCCGACTCGGTCGAGCGCAACAAGG
CAGCCATGCTCGGCAGCAACCTGCTGGAAAGCATGCGGGCGAGCCCGAAGGCGCTGTACGACGTCAAGGACCAGATGGCC
ACGCAATCCGACTTCTTCAAGGCCAAGGGGTCGGCGTTCCCCACCGCGCCGTCCTCCTGCACGCCATTGCCCGACGCGAT
CAAGGACCGCCTGGGATGCTGGGCGGAACAGGTGAAGAACGAACTGCCAGGCGCTGGCGACCTGCTGAAGAGCGACTACT
ACATCTGCCGCAGCTCGAAGCCGGGCGACTGCGACGGCAAGGGCTCCATGCTGGAAATCCGCCTGGCCTGGCGCGGCAAG
CAAGGCGCCTGCGTCAACGCCGCCGACAGCAGCGCCGACACCTCCCTCTGCTACTACACCCTCAGGGTCGAGCCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(12-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A6N0KGD7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

97.838

100

0.978