Detailed information NTG0754118

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP62_RS21665
• Genome accession: NZ_CP124328
• Coordinates: 4384911..4385903 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0787
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4379911..4390903

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP62_RS21635 (QJP62_21635)	ispD	4379972..4380682 (+)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
QJP62_RS21640 (QJP62_21640)	ispF	4380682..4381161 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP62_RS21645 (QJP62_21645)	truD	4381158..4382207 (+)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP62_RS21650 (QJP62_21650)	surE	4382188..4382949 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP62_RS21655 (QJP62_21655)	pcm	4382943..4383569 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP62_RS21660 (QJP62_21660)	nlpD	4383754..4384848 (+)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP62_RS21665 (QJP62_21665)	rpoS	4384911..4385903 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP62_RS21670 (QJP62_21670)	-	4386074..4386625 (-)	552	WP_001179444.1	flavodoxin family protein	-
QJP62_RS21675 (QJP62_21675)	-	4386850..4387893 (+)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP62_RS21680 (QJP62_21680)	ygbN	4388036..4389400 (-)	1365	WP_000104433.1	GntP family transporter	-
QJP62_RS21685 (QJP62_21685)	ygbM	4389489..4390265 (-)	777	WP_001136914.1	HPr family phosphocarrier protein	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=754118 QJP62_RS21665 WP_000081550.1 4384911..4385903(+) (rpoS) [Escherichia coli strain AVS0787]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=754118 QJP62_RS21665 WP_000081550.1 4384911..4385903(+) (rpoS) [Escherichia coli strain AVS0787]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715