Detailed information    

insolico Bioinformatically predicted

Overview

Name   sxy/tfoX   Type   Regulator
Locus tag   QJP62_RS06100 Genome accession   NZ_CP124328
Coordinates   1153547..1154176 (-) Length   209 a.a.
NCBI ID   WP_000839151.1    Uniprot ID   B7UN38
Organism   Escherichia coli strain AVS0787     
Function   positive regulator of competence gene (predicted from homology)   
Competence regulation

Genomic Context

Location: 1148547..1159176
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QJP62_RS06085 (QJP62_06085) helD 1148789..1150843 (-) 2055 WP_001295938.1 DNA helicase IV -
  QJP62_RS06090 (QJP62_06090) yccF 1150966..1151412 (+) 447 WP_001261235.1 YccF domain-containing protein -
  QJP62_RS06095 (QJP62_06095) yccS 1151422..1153584 (+) 2163 WP_000875041.1 YccS family putative transporter -
  QJP62_RS06100 (QJP62_06100) sxy/tfoX 1153547..1154176 (-) 630 WP_000839151.1 CRP-S regulon transcriptional coactivator Sxy Regulator
  QJP62_RS06105 (QJP62_06105) sulA 1154395..1154904 (+) 510 WP_000288707.1 SOS-induced cell division inhibitor SulA -
  QJP62_RS06110 (QJP62_06110) ompA 1155260..1156312 (+) 1053 WP_001346420.1 porin OmpA -
  QJP62_RS06115 (QJP62_06115) matP 1156388..1156840 (-) 453 WP_000877153.1 macrodomain Ter protein MatP -
  QJP62_RS06120 (QJP62_06120) ycbZ 1157026..1158786 (+) 1761 WP_000156502.1 Lon protease family protein -

Sequence

Protein


Download         Length: 209 a.a.        Molecular weight: 24163.08 Da        Isoelectric Point: 9.0428

>NTDB_id=754057 QJP62_RS06100 WP_000839151.1 1153547..1154176(-) (sxy/tfoX) [Escherichia coli strain AVS0787]
MKSLSYKRIYKSQEYLATLGTIEYRSLFGSYSLTVDDTVFAMVSDGELYLRACEQSAQYCVKHPPVWLTYKKCGRSVTLN
YYRVDESLWRNQLKLVRLSKYSLDAALKEKSTRNTRERLKDLPNMSFHLEAILGEVGIKDVRALRILGAKMCWLRLRQQN
CLVTEKILFMLEGAIIGIHEAALPVARRQELAEWADSLTPKQEFPAELE

Nucleotide


Download         Length: 630 bp        

>NTDB_id=754057 QJP62_RS06100 WP_000839151.1 1153547..1154176(-) (sxy/tfoX) [Escherichia coli strain AVS0787]
ATGAAAAGCCTCTCCTATAAGCGGATCTATAAATCACAAGAATACCTGGCAACGTTGGGCACAATTGAATACCGATCATT
GTTTGGTAGTTACAGCCTGACCGTTGACGACACGGTGTTTGCGATGGTTTCTGATGGTGAGTTGTATCTTCGGGCTTGTG
AGCAAAGTGCACAGTACTGTGTAAAACATCCGCCTGTCTGGCTGACATATAAAAAGTGTGGCCGATCCGTTACCCTCAAT
TACTATCGAGTTGATGAAAGTCTATGGCGAAATCAACTGAAGCTGGTGCGTCTGTCGAAATATTCTCTCGATGCAGCGCT
GAAAGAGAAAAGCACGCGCAATACCCGGGAAAGACTGAAAGATTTGCCCAATATGTCTTTTCATCTGGAAGCGATTCTCG
GGGAGGTGGGGATTAAGGATGTACGGGCGTTACGTATACTTGGGGCAAAAATGTGTTGGTTGCGACTGCGGCAGCAAAAC
TGTCTGGTGACAGAAAAGATTCTGTTTATGCTTGAAGGGGCCATTATCGGCATTCATGAAGCTGCGCTCCCAGTGGCACG
CCGCCAGGAGCTTGCAGAATGGGCTGACTCTCTTACGCCGAAACAGGAGTTTCCTGCGGAACTTGAGTAA

Domains

Predicted by InterProScan.

TfoX C-terminal domain (TfoX_C)

(116-194)

TfoX N-terminal domain (TfoX_N)

(14-106)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7UN38

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sxy/tfoX Escherichia coli BW25113 strain K-12

99.522

100

0.995