Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilA   Type   Machinery gene
Locus tag   OM952_RS16205 Genome accession   NZ_CP110303
Coordinates   3713926..3714366 (-) Length   146 a.a.
NCBI ID   WP_039568292.1    Uniprot ID   A0AB34QK76
Organism   Xanthomonas phaseoli pv. phaseoli strain BB013a     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
IScluster/Tn 3714660..3721194 3713926..3714366 flank 294


Gene organization within MGE regions


Location: 3713926..3721194
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM952_RS16205 (OM952_16205) pilA 3713926..3714366 (-) 441 WP_039568292.1 pilin Machinery gene
  OM952_RS16210 (OM952_16210) - 3714660..3715886 (-) 1227 WP_011345585.1 IS256-like element ISXax1 family transposase -
  OM952_RS16215 (OM952_16215) pilC 3716058..3717314 (+) 1257 WP_039573972.1 type II secretion system F family protein Machinery gene
  OM952_RS16220 (OM952_16220) - 3717321..3718184 (+) 864 WP_039573976.1 A24 family peptidase -
  OM952_RS16225 (OM952_16225) coaE 3718195..3718806 (+) 612 WP_007962470.1 dephospho-CoA kinase -
  OM952_RS16230 (OM952_16230) - 3718988..3720058 (+) 1071 WP_157926032.1 RHS repeat domain-containing protein -
  OM952_RS16235 (OM952_16235) - 3720107..3721194 (+) 1088 WP_087944778.1 IS3-like element ISXac2 family transposase -

Sequence

Protein


Download         Length: 146 a.a.        Molecular weight: 15218.48 Da        Isoelectric Point: 8.4936

>NTDB_id=754007 OM952_RS16205 WP_039568292.1 3713926..3714366(-) (pilA) [Xanthomonas phaseoli pv. phaseoli strain BB013a]
MKKQHGFTLIELMIVIAIIAILAAIALPQYQNYVAKSQVTAGLAELSPGKTQYETLLNEGKGSTLTTADAVGLQASSTTN
RCSTITVLAPDATTGAQTNALSCTLAGSPRIVGKKITWARDTNGVWTCSTDIATGDKAKFAPATCQ

Nucleotide


Download         Length: 441 bp        

>NTDB_id=754007 OM952_RS16205 WP_039568292.1 3713926..3714366(-) (pilA) [Xanthomonas phaseoli pv. phaseoli strain BB013a]
ATGAAGAAGCAACACGGTTTCACTCTGATCGAACTCATGATCGTCATCGCGATCATTGCAATCTTGGCCGCCATTGCACT
GCCGCAGTACCAGAACTATGTCGCAAAGTCGCAGGTCACTGCTGGTCTGGCCGAGCTGAGCCCGGGCAAGACGCAGTACG
AAACTCTTTTGAACGAAGGCAAGGGCTCGACGCTGACGACTGCTGATGCAGTTGGTCTGCAGGCCTCGTCGACCACCAAT
CGCTGTTCGACGATTACGGTGTTGGCTCCGGATGCTACAACCGGTGCGCAGACTAACGCTTTGAGCTGCACGCTGGCCGG
TAGCCCGCGTATTGTTGGTAAGAAGATCACTTGGGCTCGTGATACCAACGGTGTTTGGACCTGCTCGACTGATATCGCGA
CTGGTGATAAGGCAAAGTTCGCTCCAGCTACCTGTCAGTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-27)

Pilin (bacterial filament) (Pilin)

(35-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilA Acinetobacter baumannii strain A118

48.966

99.315

0.486
  pilA Pseudomonas aeruginosa PAK

43.137

100

0.452
  pilA Vibrio cholerae strain A1552

41.781

100

0.418
  pilA Vibrio cholerae C6706

41.781

100

0.418
  pilA Vibrio cholerae O1 biovar El Tor strain E7946

41.781

100

0.418
  pilA/pilAI Pseudomonas stutzeri DSM 10701

41.667

98.63

0.411
  pilA/pilAII Pseudomonas stutzeri DSM 10701

41.259

97.945

0.404
  comP Acinetobacter baylyi ADP1

36.709

100

0.397
  pilE Neisseria gonorrhoeae strain FA1090

34.783

100

0.384
  pilA Ralstonia pseudosolanacearum GMI1000

33.133

100

0.377
  pilE Neisseria gonorrhoeae MS11

34.161

100

0.377