Detailed information NTG0075398

Bioinformatically predicted

Overview

• Name: pilA
• Type: Machinery gene
• Locus tag: THMIRH_RS01310
• Genome accession: NZ_AP021888
• Coordinates: 338403..339542 (-)
• Length: 379 a.a.
• NCBI ID: WP_173290002.1
• Uniprot ID: A0A6F8PKI7
• Organism: Thiosulfativibrio zosterae strain AkT22
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 333403..344542

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
THMIRH_RS01280 (THMIRHAT_02510)	-	334015..334764 (+)	750	WP_173289993.1	type III pantothenate kinase	-
THMIRH_RS01290 (THMIRHAT_02520)	fabA	335023..335538 (+)	516	WP_173289995.1	3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabA	-
THMIRH_RS01295 (THMIRHAT_02530)	fabB	335541..336761 (+)	1221	WP_173289997.1	beta-ketoacyl-ACP synthase I	-
THMIRH_RS01300 (THMIRHAT_02540)	-	336892..337518 (-)	627	WP_173289999.1	transglycosylase SLT domain-containing protein	-
THMIRH_RS01305 (THMIRHAT_02550)	-	337515..338390 (-)	876	WP_173290001.1	DUF2914 domain-containing protein	-
THMIRH_RS01310 (THMIRHAT_02560)	pilA	338403..339542 (-)	1140	WP_173290002.1	signal recognition particle-docking protein FtsY	Machinery gene
THMIRH_RS01315 (THMIRHAT_02570)	-	339675..341036 (+)	1362	WP_173290004.1	pitrilysin family protein	-
THMIRH_RS01320 (THMIRHAT_02580)	-	341036..342367 (+)	1332	WP_173290006.1	pitrilysin family protein	-
THMIRH_RS01325 (THMIRHAT_02590)	-	342493..344496 (-)	2004	WP_173290008.1	methyl-accepting chemotaxis protein	-

Sequence

Protein

• Length: 379 a.a.
• Molecular weight: 41116.29 Da
• Isoelectric Point: 5.7895

>NTDB_id=75398 THMIRH_RS01310 WP_173290002.1 338403..339542(-) (pilA) [Thiosulfativibrio zosterae strain AkT22]
MFNLFRRNKKTPNTPEASEKSEELLPAEAMAEVIETPQAPEPAPQVAAAADPTPATPEVPQKVTSEPEPVKISLFTRLKN
SLWKTRQGFTESISALLLGRKEIDRDFLDELEMILLTADVGLDATDKIIGNLTQQLSRKELKDPEALIHSLKNQLKQLLE
PVQSPLKIEPPTDGPFVILMVGVNGVGKTTTIGKLAKKFQNEGKSVMLAAGDTFRAAAVEQLQTWGERNKVPVIAQKTGA
DSAAVIFDAIQSAKAKKIDVLIADTAGRLHTQSNLMEELRKVKRVIQKVDASAPHEVMLVLDAGTGQNAINQAKQFHEAM
HLTGLTLTKLDGTAKGGVIFALAQQLGIPVRFIGVGEAIDDLRPFNANDFAEALFDQSA

Nucleotide

• Length: 1140 bp

>NTDB_id=75398 THMIRH_RS01310 WP_173290002.1 338403..339542(-) (pilA) [Thiosulfativibrio zosterae strain AkT22]
ATGTTTAACCTGTTTCGTCGTAATAAAAAAACACCCAATACCCCAGAAGCTTCTGAAAAATCAGAAGAACTTTTGCCCGC
AGAAGCGATGGCTGAAGTCATTGAAACACCTCAAGCCCCCGAGCCAGCGCCCCAAGTCGCAGCTGCGGCAGACCCAACAC
CCGCAACACCAGAAGTGCCCCAAAAAGTCACTAGCGAACCAGAACCGGTCAAAATAAGCCTGTTTACGCGTTTAAAAAAT
AGCCTTTGGAAAACCCGCCAAGGGTTTACTGAAAGCATTTCGGCATTGCTGTTAGGGCGCAAAGAGATTGATCGTGATTT
TTTAGACGAATTAGAAATGATTTTGCTCACCGCCGATGTTGGCTTAGATGCGACAGATAAAATCATTGGCAACCTAACCC
AACAGCTTTCTCGTAAAGAACTCAAAGACCCAGAAGCCCTGATTCACTCACTCAAAAATCAACTTAAACAATTGTTAGAG
CCTGTGCAATCGCCGTTAAAAATTGAGCCACCGACTGATGGGCCATTTGTGATTCTCATGGTTGGTGTTAATGGCGTGGG
CAAAACCACCACCATTGGCAAGCTGGCCAAAAAGTTTCAAAACGAAGGCAAGTCGGTCATGCTGGCGGCGGGAGATACCT
TTCGTGCCGCTGCCGTTGAACAGCTTCAAACTTGGGGCGAACGCAATAAAGTACCCGTGATTGCTCAAAAAACAGGGGCA
GATTCTGCCGCAGTTATTTTTGATGCCATACAGTCCGCCAAAGCTAAGAAAATTGATGTGCTGATTGCAGATACCGCAGG
ACGCTTGCATACCCAAAGTAATTTAATGGAAGAGTTACGCAAGGTAAAACGCGTGATTCAAAAAGTTGACGCCAGCGCAC
CGCATGAAGTGATGTTGGTGTTGGATGCTGGCACGGGACAAAACGCCATCAATCAAGCTAAACAATTCCACGAAGCCATG
CACCTAACCGGACTTACCTTGACCAAACTTGATGGAACTGCAAAAGGTGGTGTCATTTTTGCTTTAGCTCAACAGTTGGG
CATTCCTGTTAGGTTTATTGGGGTGGGAGAAGCGATTGATGACCTCAGACCTTTTAATGCCAACGATTTTGCCGAAGCTT
TGTTTGATCAATCTGCATAA

Domains

Predicted by InterproScan.

• SRP54-type protein, GTPase domain (SRP54) (175-375)

• SRP54-type protein, helical bundle domain (SRP54_N) (90-155)

3D structure

• AlphaFold DB: A0A6F8PKI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilA	Neisseria gonorrhoeae MS11	52.286	92.348	0.483