Detailed information NTG0753756

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: QJP81_RS19210
• Genome accession: NZ_CP124320
• Coordinates: 3922084..3923076 (-)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain AVS0754
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 3917084..3928076

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QJP81_RS19190 (QJP81_19190)	ygbM	3917722..3918498 (+)	777	WP_001136914.1	HPr family phosphocarrier protein	-
QJP81_RS19195 (QJP81_19195)	ygbN	3918587..3919951 (+)	1365	WP_000104433.1	GntP family transporter	-
QJP81_RS19200 (QJP81_19200)	-	3920094..3921137 (-)	1044	WP_001161583.1	MBL fold metallo-hydrolase	-
QJP81_RS19205 (QJP81_19205)	-	3921362..3921913 (+)	552	WP_001179444.1	flavodoxin family protein	-
QJP81_RS19210 (QJP81_19210)	rpoS	3922084..3923076 (-)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
QJP81_RS19215 (QJP81_19215)	nlpD	3923139..3924233 (-)	1095	WP_306278776.1	murein hydrolase activator NlpD	-
QJP81_RS19220 (QJP81_19220)	pcm	3924418..3925044 (-)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
QJP81_RS19225 (QJP81_19225)	surE	3925038..3925799 (-)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
QJP81_RS19230 (QJP81_19230)	truD	3925780..3926829 (-)	1050	WP_000568920.1	tRNA pseudouridine(13) synthase TruD	-
QJP81_RS19235 (QJP81_19235)	ispF	3926826..3927305 (-)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
QJP81_RS19240 (QJP81_19240)	ispD	3927305..3928015 (-)	711	WP_000246149.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=753756 QJP81_RS19210 WP_000081550.1 3922084..3923076(-) (rpoS) [Escherichia coli strain AVS0754]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=753756 QJP81_RS19210 WP_000081550.1 3922084..3923076(-) (rpoS) [Escherichia coli strain AVS0754]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCACGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCATTGCTGGACATCCTGGCCGAT
GAAAAAGAGAATGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715