Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssbA   Type   Machinery gene
Locus tag   OM992_RS21020 Genome accession   NZ_CP110268
Coordinates   4073327..4073845 (-) Length   172 a.a.
NCBI ID   WP_047477329.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4068327..4078845
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS20990 (OM992_20990) - 4069503..4069883 (-) 381 WP_016937329.1 VOC family protein -
  OM992_RS20995 (OM992_20995) - 4069940..4070878 (-) 939 WP_264819459.1 LacI family DNA-binding transcriptional regulator -
  OM992_RS21000 (OM992_21000) xth 4070941..4071699 (-) 759 WP_264819460.1 exodeoxyribonuclease III -
  OM992_RS21005 (OM992_21005) - 4071746..4072273 (-) 528 WP_264819462.1 methylated-DNA--[protein]-cysteine S-methyltransferase -
  OM992_RS21010 (OM992_21010) - 4072270..4072851 (-) 582 WP_264819463.1 bifunctional transcriptional activator/DNA repair enzyme AdaA -
  OM992_RS21015 (OM992_21015) rpsR 4073044..4073283 (-) 240 WP_004392983.1 30S ribosomal protein S18 -
  OM992_RS21020 (OM992_21020) ssbA 4073327..4073845 (-) 519 WP_047477329.1 single-stranded DNA-binding protein SsbA Machinery gene
  OM992_RS21025 (OM992_21025) rpsF 4073885..4074172 (-) 288 WP_004392977.1 30S ribosomal protein S6 -
  OM992_RS21030 (OM992_21030) ychF 4074284..4075384 (-) 1101 WP_045925735.1 redox-regulated ATPase YchF -
  OM992_RS21035 (OM992_21035) - 4075512..4077515 (-) 2004 WP_264819464.1 molybdopterin-dependent oxidoreductase -
  OM992_RS21040 (OM992_21040) - 4077562..4077768 (-) 207 WP_007615075.1 DUF951 domain-containing protein -

Sequence

Protein


Download         Length: 172 a.a.        Molecular weight: 18718.28 Da        Isoelectric Point: 4.7621

>NTDB_id=753704 OM992_RS21020 WP_047477329.1 4073327..4073845(-) (ssbA) [Bacillus siamensis strain YB-1631]
MLNRVVLVGRLTKDPELRYTPSGAAVATFTLAVNRTFTNQSGEREADFINCVTWRRQAENVANFLKKGSLAGVDGRLQTR
NYENQQGQRVFVTEVQAESVQFLEPKNSGGSGSGGYNEGNSGGGQYFGGGQNDNPFGGNQNSQRRNQGNSFNDDPFANDG
KPIDISDDDLPF

Nucleotide


Download         Length: 519 bp        

>NTDB_id=753704 OM992_RS21020 WP_047477329.1 4073327..4073845(-) (ssbA) [Bacillus siamensis strain YB-1631]
ATGCTTAACCGAGTTGTATTAGTCGGAAGACTGACAAAAGACCCAGAGCTTCGTTATACGCCAAGCGGTGCGGCTGTCGC
CACGTTTACTCTTGCTGTGAATCGTACTTTCACGAACCAGTCCGGAGAACGTGAAGCCGATTTCATTAATTGTGTCACTT
GGAGAAGACAAGCCGAAAACGTTGCAAACTTTCTTAAAAAAGGAAGCCTTGCCGGCGTAGACGGCCGACTCCAGACAAGA
AATTATGAAAATCAGCAGGGACAGCGTGTCTTCGTGACAGAAGTCCAAGCTGAAAGTGTTCAATTTCTTGAGCCTAAAAA
CAGCGGCGGTTCTGGATCAGGCGGATACAACGAAGGAAACAGCGGCGGAGGCCAATACTTTGGCGGAGGCCAAAATGATA
ATCCGTTCGGCGGAAATCAGAACAGCCAGAGACGAAATCAAGGGAACAGCTTTAATGATGATCCATTTGCCAACGACGGC
AAGCCGATTGACATCTCGGATGATGATCTTCCGTTCTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-103)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssbA Bacillus subtilis subsp. subtilis str. 168

98.256

100

0.983
  ssb Latilactobacillus sakei subsp. sakei 23K

58.757

100

0.605
  ssbB Bacillus subtilis subsp. subtilis str. 168

64.151

61.628

0.395
  ssb Glaesserella parasuis strain SC1401

35.519

100

0.378