Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   OM992_RS14310 Genome accession   NZ_CP110268
Coordinates   2774821..2775573 (-) Length   250 a.a.
NCBI ID   WP_264818945.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2769821..2780573
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS14280 (OM992_14280) - 2770170..2770604 (+) 435 WP_063174698.1 helix-turn-helix domain-containing protein -
  OM992_RS14285 (OM992_14285) - 2770618..2771064 (+) 447 WP_264818942.1 ImmA/IrrE family metallo-endopeptidase -
  OM992_RS14290 (OM992_14290) - 2771104..2772528 (+) 1425 WP_264818943.1 recombinase family protein -
  OM992_RS14295 (OM992_14295) radC 2772541..2772948 (-) 408 Protein_2770 DNA repair protein RadC -
  OM992_RS14300 (OM992_14300) - 2772980..2773549 (-) 570 WP_016938779.1 nucleoside triphosphate pyrophosphatase -
  OM992_RS14305 (OM992_14305) - 2773693..2774694 (-) 1002 WP_264818944.1 SPOR domain-containing protein -
  OM992_RS14310 (OM992_14310) comC 2774821..2775573 (-) 753 WP_264818945.1 A24 family peptidase Machinery gene
  OM992_RS14315 (OM992_14315) - 2775713..2777005 (-) 1293 WP_264818946.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  OM992_RS14320 (OM992_14320) - 2777064..2779706 (-) 2643 WP_099744716.1 valine--tRNA ligase -
  OM992_RS14325 (OM992_14325) - 2780158..2780349 (+) 192 WP_045926471.1 hypothetical protein -

Sequence

Protein


Download         Length: 250 a.a.        Molecular weight: 26784.36 Da        Isoelectric Point: 8.8946

>NTDB_id=753681 OM992_RS14310 WP_264818945.1 2774821..2775573(-) (comC) [Bacillus siamensis strain YB-1631]
MLFILFVLGLIFGSFFYTVACRIPLRISVISPRSSCSFCGLPLSWGELVPVVSYILQRGRCRNCRAKLSVMYPAAECWTA
CLFTAAGIHFGFSKELLIALLFLSLLMIVTVTDLQYMLIPDKVLLFFLPLFIAGRIFSPLDSWYAGFAGAVCGFALLVFI
MFVSKGGIGAGDVKLFGVIGLALGVKLVLIAFFLSVIIGAVYGMCAAAGGRLGKKQPLPFAPAIAAGSAVSYLYGEELFA
FYITLASGGA

Nucleotide


Download         Length: 753 bp        

>NTDB_id=753681 OM992_RS14310 WP_264818945.1 2774821..2775573(-) (comC) [Bacillus siamensis strain YB-1631]
GTGCTTTTCATTCTGTTTGTTCTCGGTCTGATTTTCGGTTCTTTTTTTTATACAGTCGCATGCCGTATTCCGCTTCGAAT
CTCGGTTATTTCGCCGCGTTCATCCTGTTCGTTCTGCGGCTTGCCGCTCTCCTGGGGGGAGCTTGTGCCCGTTGTTTCCT
ATATCCTGCAAAGAGGAAGGTGCAGAAACTGCCGTGCGAAGCTGTCAGTGATGTATCCGGCAGCGGAATGCTGGACGGCA
TGTTTATTCACGGCTGCCGGTATCCATTTCGGTTTCTCAAAAGAGCTGCTAATCGCGCTGTTATTTCTGTCTCTGCTGAT
GATTGTTACTGTGACGGATCTGCAATATATGCTGATTCCTGACAAGGTTCTGCTGTTTTTTCTTCCGCTTTTTATCGCCG
GCCGTATTTTTTCTCCGCTGGATTCATGGTATGCGGGGTTTGCCGGAGCTGTTTGCGGATTTGCTCTGCTTGTTTTTATC
ATGTTTGTCAGTAAAGGAGGCATCGGCGCAGGTGATGTGAAGCTGTTTGGAGTGATCGGGCTTGCGCTCGGTGTGAAGCT
CGTCCTTATTGCATTCTTTCTTTCCGTTATAATCGGAGCCGTATACGGTATGTGCGCCGCAGCGGGGGGCAGGCTTGGTA
AAAAGCAGCCTTTACCGTTTGCGCCGGCCATCGCAGCCGGGAGCGCTGTGAGTTACTTATACGGTGAAGAGCTGTTCGCG
TTTTACATCACACTCGCTTCAGGCGGTGCTTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-204)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

58.468

99.2

0.58