Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   OM992_RS13260 Genome accession   NZ_CP110268
Coordinates   2586655..2587422 (-) Length   255 a.a.
NCBI ID   WP_016938920.1    Uniprot ID   A0AAE2NXC9
Organism   Bacillus siamensis strain YB-1631     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2581655..2592422
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS13240 (OM992_13240) - 2581856..2582668 (-) 813 WP_016938923.1 pyruvate, water dikinase regulatory protein -
  OM992_RS13245 (OM992_13245) ccpN 2582694..2583332 (-) 639 WP_003152989.1 transcriptional regulator CcpN -
  OM992_RS13250 (OM992_13250) glyS 2583434..2585473 (-) 2040 WP_264818843.1 glycine--tRNA ligase subunit beta -
  OM992_RS13255 (OM992_13255) glyQ 2585466..2586353 (-) 888 WP_016938921.1 glycine--tRNA ligase subunit alpha -
  OM992_RS13260 (OM992_13260) recO 2586655..2587422 (-) 768 WP_016938920.1 DNA repair protein RecO Machinery gene
  OM992_RS13265 (OM992_13265) - 2587459..2587602 (-) 144 WP_007408286.1 YqzL family protein -
  OM992_RS13270 (OM992_13270) era 2587758..2588663 (-) 906 WP_016938919.1 GTPase Era -
  OM992_RS13275 (OM992_13275) - 2588644..2589054 (-) 411 WP_264818844.1 cytidine deaminase -
  OM992_RS13280 (OM992_13280) - 2589176..2589550 (-) 375 WP_016938917.1 diacylglycerol kinase family protein -
  OM992_RS13285 (OM992_13285) ybeY 2589531..2590004 (-) 474 WP_003152973.1 rRNA maturation RNase YbeY -
  OM992_RS13290 (OM992_13290) - 2590005..2592137 (-) 2133 WP_045926741.1 HD family phosphohydrolase -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29373.05 Da        Isoelectric Point: 8.7962

>NTDB_id=753674 OM992_RS13260 WP_016938920.1 2586655..2587422(-) (recO) [Bacillus siamensis strain YB-1631]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGARKSASRLSAVSQPFLYGSFLMQRTSGLGTLQQGEMILSMRT
IREDLFLTAYAAFIAELTDKGTEEKKPNPYLFELILESFKRLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSRDG
TFHFSIRDNGFICHRCFEKDPYKVPISPQTARLLRLFYYFDIGRLGSVSLKHETKNEIKRVIDLYYEEYSGLYLKSKRFL
DQMESMKNLLDENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=753674 OM992_RS13260 WP_016938920.1 2586655..2587422(-) (recO) [Bacillus siamensis strain YB-1631]
ATGCTGACAAAATGTGAAGGAATCGTGCTTCGTACGAATGACTACGGAGAGACGAATAAAATCGTGACATTGCTGACGAG
GGAACACGGCAAAATCGGCGTCATGGCAAGGGGTGCCAGGAAGTCAGCCAGCCGGCTGTCAGCAGTCAGCCAGCCTTTTT
TGTACGGGTCATTTTTAATGCAAAGAACATCCGGGCTCGGCACGCTCCAGCAGGGTGAAATGATTCTCAGCATGAGAACG
ATCAGAGAAGACTTGTTTTTGACGGCATATGCCGCTTTTATCGCTGAACTCACTGACAAAGGAACGGAGGAGAAGAAACC
GAACCCCTATTTATTCGAATTGATTCTCGAATCCTTTAAGAGGCTGAATGAGGGGACTGACCCGGACGTGATCACCTTTA
TCGTTCAGATGAAAATGCTTGGCGTCATGGGGCTGTATCCGGAGCTGAATCATTGTGTCCACTGTAAAAGCCGGGACGGG
ACGTTTCATTTTTCCATAAGAGATAACGGTTTTATCTGCCACCGCTGCTTTGAAAAGGATCCGTACAAAGTTCCGATTTC
GCCGCAAACGGCAAGGCTGCTAAGGCTTTTTTATTACTTTGATATCGGAAGGCTCGGCAGCGTCTCGTTAAAGCACGAAA
CCAAAAATGAAATAAAACGGGTCATTGATCTGTATTACGAGGAATATTCAGGGCTTTATTTAAAGTCAAAGCGGTTTTTA
GATCAGATGGAAAGCATGAAGAACCTTTTGGATGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

89.412

100

0.894