Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   OM992_RS13000 Genome accession   NZ_CP110268
Coordinates   2540700..2541737 (-) Length   345 a.a.
NCBI ID   WP_264818827.1    Uniprot ID   -
Organism   Bacillus siamensis strain YB-1631     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2535700..2546737
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS12950 (OM992_12950) tasA 2535936..2536721 (-) 786 WP_047475632.1 biofilm matrix protein TasA -
  OM992_RS12955 (OM992_12955) sipW 2536785..2537369 (-) 585 WP_264818823.1 signal peptidase I SipW -
  OM992_RS12960 (OM992_12960) tapA 2537341..2538012 (-) 672 WP_264818824.1 amyloid fiber anchoring/assembly protein TapA -
  OM992_RS12965 (OM992_12965) - 2538271..2538600 (+) 330 WP_016938972.1 DUF3889 domain-containing protein -
  OM992_RS12970 (OM992_12970) - 2538639..2538818 (-) 180 WP_016938971.1 YqzE family protein -
  OM992_RS12975 (OM992_12975) comGG 2538875..2539252 (-) 378 WP_047475629.1 competence type IV pilus minor pilin ComGG Machinery gene
  OM992_RS12980 (OM992_12980) comGF 2539253..2539753 (-) 501 WP_264818825.1 competence type IV pilus minor pilin ComGF -
  OM992_RS12985 (OM992_12985) comGE 2539662..2539976 (-) 315 WP_264818826.1 competence type IV pilus minor pilin ComGE -
  OM992_RS12990 (OM992_12990) comGD 2539960..2540397 (-) 438 WP_045926719.1 competence type IV pilus minor pilin ComGD Machinery gene
  OM992_RS12995 (OM992_12995) comGC 2540387..2540695 (-) 309 WP_016938966.1 competence type IV pilus major pilin ComGC Machinery gene
  OM992_RS13000 (OM992_13000) comGB 2540700..2541737 (-) 1038 WP_264818827.1 competence type IV pilus assembly protein ComGB Machinery gene
  OM992_RS13005 (OM992_13005) comGA 2541724..2542794 (-) 1071 WP_095241609.1 competence type IV pilus ATPase ComGA Machinery gene
  OM992_RS13010 (OM992_13010) - 2542987..2543937 (-) 951 WP_264818828.1 magnesium transporter CorA family protein -
  OM992_RS13015 (OM992_13015) - 2544085..2545386 (+) 1302 WP_060964762.1 hemolysin family protein -
  OM992_RS13020 (OM992_13020) - 2545424..2546254 (-) 831 WP_320109015.1 STAS domain-containing protein -

Sequence

Protein


Download         Length: 345 a.a.        Molecular weight: 39661.98 Da        Isoelectric Point: 9.3064

>NTDB_id=753672 OM992_RS13000 WP_264818827.1 2540700..2541737(-) (comGB) [Bacillus siamensis strain YB-1631]
MKRIKRTWPLKDQAAFLKRLGEMTEKGYSLIEGLRLLKLQLHKRQLAELTDGIRRLREGDAFYEVLEALSFHKEAVSICY
FAEKHGELPGAMKQSGELLQRKLMQTNQVKKMLRYPMFLICSVCVMFYILQSMIIPQFSGIYQSMNMNTSGCVSFIFSFF
QHFHEACALVLSAALSLFLFVWFLCKKKSPQDKMLIVVKIPLIGKAAVLFNSYFFSLQLSSLLKSGLSIYDSLTAFKEQS
FLPFYREEADMLITRLKAGETIESALSGHPCYEKDLAAAVSHGQANGRLHRELYTYSQFMMERLEQNAEKYTGILQPVIY
GVVAGMILIVYMSMLMPMYQMMNQM

Nucleotide


Download         Length: 1038 bp        

>NTDB_id=753672 OM992_RS13000 WP_264818827.1 2540700..2541737(-) (comGB) [Bacillus siamensis strain YB-1631]
ATGAAGCGGATTAAAAGAACCTGGCCGTTGAAGGATCAAGCGGCTTTTTTGAAAAGGCTCGGCGAAATGACCGAAAAAGG
GTACAGTCTGATCGAAGGGCTCAGACTGCTGAAACTCCAGCTTCATAAACGCCAGCTTGCAGAGCTGACGGACGGAATCC
GCCGGCTGAGGGAAGGCGATGCGTTTTACGAAGTGCTTGAGGCATTGTCTTTTCATAAAGAAGCCGTCTCTATCTGCTAT
TTCGCGGAAAAACACGGAGAATTGCCCGGGGCGATGAAACAAAGCGGCGAATTGTTACAGAGAAAGCTCATGCAGACGAA
TCAAGTCAAAAAAATGCTCCGGTATCCGATGTTTTTAATCTGCTCCGTCTGTGTCATGTTTTATATTCTGCAAAGTATGA
TCATCCCGCAATTTTCAGGGATTTATCAATCAATGAATATGAATACTTCCGGTTGCGTCAGTTTCATTTTTTCGTTTTTT
CAGCATTTTCACGAAGCTTGCGCACTGGTGCTGTCAGCCGCTCTCAGCTTGTTTTTGTTCGTTTGGTTTTTATGTAAGAA
AAAATCCCCGCAAGACAAAATGCTTATTGTTGTGAAAATCCCCTTAATAGGAAAAGCAGCCGTTCTTTTTAACAGCTATT
TTTTCTCTTTACAGCTCAGCAGTCTTCTGAAATCCGGTCTTTCTATCTATGACAGCTTAACGGCTTTTAAGGAACAATCT
TTTCTGCCTTTTTATCGTGAAGAAGCGGATATGCTCATTACACGTTTGAAAGCAGGTGAGACAATAGAATCCGCTCTTTC
CGGGCATCCGTGTTATGAAAAAGATCTAGCGGCTGCAGTCAGCCACGGACAGGCAAACGGCAGGCTTCATCGCGAGCTTT
ATACGTACAGTCAGTTTATGATGGAGCGCCTTGAACAAAACGCGGAGAAGTATACAGGCATTCTCCAGCCTGTCATTTAC
GGCGTTGTGGCCGGTATGATTCTGATTGTCTATATGTCAATGCTGATGCCGATGTACCAGATGATGAACCAAATGTAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(16-136)

Type II secretion system (T2SS), protein F (T2SSF)

(215-337)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Bacillus subtilis subsp. subtilis str. 168

65.015

93.623

0.609