Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   OM992_RS12765 Genome accession   NZ_CP110268
Coordinates   2503923..2505653 (-) Length   576 a.a.
NCBI ID   WP_045926698.1    Uniprot ID   A0AAE2TMH7
Organism   Bacillus siamensis strain YB-1631     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2498923..2510653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  OM992_RS12740 (OM992_12740) - 2499341..2499553 (+) 213 WP_032864884.1 spore germination protein -
  OM992_RS12745 (OM992_12745) - 2499678..2499890 (+) 213 WP_016939010.1 spore germination protein -
  OM992_RS12750 (OM992_12750) alr 2500076..2501257 (+) 1182 WP_264818810.1 alanine racemase -
  OM992_RS12755 (OM992_12755) spo0A 2501399..2502199 (-) 801 WP_003153177.1 sporulation transcription factor Spo0A Regulator
  OM992_RS12760 (OM992_12760) spoIVB 2502479..2503759 (-) 1281 WP_264818811.1 SpoIVB peptidase -
  OM992_RS12765 (OM992_12765) recN 2503923..2505653 (-) 1731 WP_045926698.1 DNA repair protein RecN Machinery gene
  OM992_RS12770 (OM992_12770) ahrC 2505685..2506134 (-) 450 WP_003153173.1 transcriptional regulator AhrC/ArgR -
  OM992_RS12775 (OM992_12775) - 2506231..2507076 (-) 846 WP_016939006.1 TlyA family RNA methyltransferase -
  OM992_RS12780 (OM992_12780) dxs 2507073..2508974 (-) 1902 WP_016939005.1 1-deoxy-D-xylulose-5-phosphate synthase -
  OM992_RS12785 (OM992_12785) - 2509117..2510007 (-) 891 WP_264818812.1 polyprenyl synthetase family protein -
  OM992_RS12790 (OM992_12790) - 2509997..2510251 (-) 255 WP_007408352.1 exodeoxyribonuclease VII small subunit -

Sequence

Protein


Download         Length: 576 a.a.        Molecular weight: 64010.83 Da        Isoelectric Point: 4.7287

>NTDB_id=753666 OM992_RS12765 WP_045926698.1 2503923..2505653(-) (recN) [Bacillus siamensis strain YB-1631]
MLAELSIKNFAIIEELTISFERGLTVLTGETGAGKSIIIDAVSLLVGGRGSSEFVRYGETKAELEGLFLLDSGHPVFEVC
REQGIDASDDMIVMRRDINAGGKSVCRVNGKLVTIAALREIGRLLLDIHGQHDNQLLMEDDKHLELLDKFAGAEAESALQ
AYQEGYDRYMKLLKKVKKLSESEQEMAHRLDLIQFQLEEIESAKLELNEDELLQEERKQISNFEKIYESLQNAYNALRSE
QGGLDWVGMASAQLEDISDINEPLQKLSESVSSSYYLLEDATFQMRNLLDDLEYDPERLNFIETRLNEIKQLKRKYGATV
EDILEYGSKIEEEIDQIENRDSHLEALKKELESVGKDVAVEAANLSKIRKAWAKKLAEAIHQELKSLYMGKSTFDTEFLV
KTDPSASEAPVVNGQPVQLTQKGIDLVKFLISTNTGEPLKPLSKVASGGELSRVMLALKSIFSSQQDVTSIIFDEVDTGV
SGRVAQAIAEKIHKVSTGSQVLCITHLPQVAAMADTHLLIAKEFKDGRTTTHVTPLSKQDKVAEIGRMIAGVEVTDLTKR
HAQELLKQAGQVKTTG

Nucleotide


Download         Length: 1731 bp        

>NTDB_id=753666 OM992_RS12765 WP_045926698.1 2503923..2505653(-) (recN) [Bacillus siamensis strain YB-1631]
TTGTTAGCTGAACTATCAATAAAAAACTTTGCCATTATAGAGGAACTGACGATTTCGTTTGAACGGGGGCTCACCGTCCT
GACGGGAGAAACAGGGGCCGGCAAGTCAATTATTATAGACGCCGTTTCCCTGTTAGTCGGCGGCCGCGGGTCGTCTGAAT
TTGTCCGTTACGGTGAAACAAAGGCCGAGCTTGAAGGACTGTTTCTTTTGGACAGCGGCCATCCCGTTTTTGAGGTGTGC
CGTGAGCAGGGAATAGACGCATCTGACGACATGATTGTCATGAGAAGAGACATTAATGCCGGGGGAAAAAGCGTCTGCCG
TGTCAATGGAAAATTAGTAACGATTGCGGCTTTGAGGGAGATCGGCAGACTTTTATTAGATATTCACGGGCAGCATGACA
ACCAGCTGTTAATGGAAGATGACAAACATTTAGAGCTTTTGGATAAATTTGCGGGTGCTGAGGCCGAATCAGCGCTTCAG
GCATACCAGGAAGGCTACGACCGTTATATGAAGCTGCTCAAAAAAGTGAAGAAGCTGTCGGAAAGCGAACAGGAAATGGC
GCATCGGTTAGATCTGATCCAATTTCAGCTTGAAGAAATCGAATCAGCGAAGCTCGAATTGAATGAAGACGAGCTTCTTC
AAGAAGAGCGGAAGCAGATATCCAACTTTGAAAAAATTTATGAATCATTGCAAAACGCCTATAATGCGCTCCGCAGCGAA
CAGGGGGGGCTTGACTGGGTCGGGATGGCCTCTGCCCAGCTTGAAGACATTTCGGATATCAATGAACCGCTGCAAAAGCT
GTCAGAAAGTGTGTCAAGTTCCTATTATCTGCTGGAGGATGCAACCTTTCAAATGCGCAATCTGCTAGATGATCTGGAGT
ATGACCCGGAACGGCTGAATTTTATTGAAACCCGTTTAAACGAGATTAAACAGCTGAAGCGTAAATACGGAGCGACGGTC
GAAGACATTCTGGAATACGGCTCCAAAATAGAAGAGGAAATTGATCAAATCGAAAACCGCGACAGCCACCTTGAAGCGCT
GAAGAAGGAACTGGAGTCCGTCGGCAAAGATGTGGCCGTAGAAGCCGCCAATTTATCAAAAATCAGAAAAGCCTGGGCGA
AAAAACTGGCGGAAGCAATTCATCAGGAATTAAAGAGCCTGTATATGGGCAAATCAACGTTTGATACGGAATTCCTCGTG
AAAACCGATCCGTCTGCCAGTGAAGCGCCGGTTGTCAACGGCCAGCCCGTGCAGCTTACCCAAAAGGGAATTGACCTCGT
GAAATTTTTAATTTCAACGAACACCGGTGAGCCGTTAAAACCGCTGTCAAAGGTCGCATCCGGCGGCGAACTTTCAAGGG
TGATGCTGGCGCTGAAGAGTATTTTTTCTTCTCAGCAGGATGTCACCTCCATCATCTTTGATGAAGTGGACACTGGCGTA
AGCGGGCGGGTTGCCCAAGCCATCGCGGAAAAAATCCATAAAGTATCGACCGGTTCACAGGTGCTCTGCATTACACACCT
TCCGCAGGTTGCCGCTATGGCGGATACGCACCTTTTGATCGCAAAAGAATTCAAAGACGGACGGACGACAACACATGTCA
CGCCGCTTTCCAAGCAGGATAAGGTAGCGGAAATCGGCCGTATGATTGCGGGTGTTGAAGTGACCGATCTGACAAAACGG
CATGCGCAAGAGCTTTTAAAACAGGCCGGACAGGTAAAAACGACAGGATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-522)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

89.062

100

0.891